Mario Nicodemi
Mario Nicodemi
Professor of Theoretical Physics, UniversitÓ di Napoli "Federico II"
Verified email at
Cited by
Cited by
Complex multi-enhancer contacts captured by genome architecture mapping
RA Beagrie, A Scialdone, M Schueler, DCA Kraemer, M Chotalia, SQ Xie, ...
Nature 543 (7646), 519-524, 2017
Complexity of chromatin folding is captured by the strings and binders switch model
M Barbieri, M Chotalia, J Fraser, LM Lavitas, J Dostie, A Pombo, ...
Proceedings of the National Academy of Sciences 109 (40), 16173-16178, 2012
Slow relaxation and compaction of granular systems
P Richard, M Nicodemi, R Delannay, P Ribiere, D Bideau
Nature materials 4 (2), 121-128, 2005
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ...
Molecular systems biology 11 (12), 852, 2015
Universal fluctuations in correlated systems
ST Bramwell, K Christensen, JY Fortin, PCW Holdsworth, HJ Jensen, ...
Physical Review Letters 84 (17), 3744, 2000
A “Tetris-like” model for the compaction of dry granular media
E Caglioti, V Loreto, HJ Herrmann, M Nicodemi
Physical Review Letters 79 (8), 1575, 1997
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ...
Nature structural & molecular biology 28 (2), 152-161, 2021
Polymer physics of chromosome large-scale 3D organisation
AM Chiariello, C Annunziatella, S Bianco, A Esposito, M Nicodemi
Scientific reports 6 (1), 29775, 2016
Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
AM Oudelaar, JOJ Davies, LLP Hanssen, JM Telenius, R Schwessinger, ...
Nature genetics 50 (12), 1744-1751, 2018
Polymer physics predicts the effects of structural variants on chromatin architecture
S Bianco, DG Lupi߽ez, AM Chiariello, C Annunziatella, K Kraft, ...
Nature genetics 50 (5), 662-667, 2018
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
Nature Genetics 50, 1463-1473, 2018
Frustration and slow dynamics of granular packings
M Nicodemi, A Coniglio, HJ Herrmann
Physical Review E 55 (4), 3962, 1997
Preformed chromatin topology assists transcriptional robustness of Shh during limb development
C Paliou, P Guckelberger, R Sch÷pflin, V Heinrich, A Esposito, ...
Proceedings of the National Academy of Sciences 116 (25), 12390-12399, 2019
Cell-type specialization is encoded by specific chromatin topologies
W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabˇ, M Meijer, ...
Nature 599 (7886), 684-691, 2021
Thermodynamic pathways to genome spatial organization in the cell nucleus
M Nicodemi, A Prisco
Biophysical journal 96 (6), 2168-2177, 2009
Universality in solar flare and earthquake occurrence
L de Arcangelis, C Godano, E Lippiello, M Nicodemi
Physical review letters 96 (5), 051102, 2006
Models of chromosome structure
M Nicodemi, A Pombo
Current opinion in cell biology 28, 90-95, 2014
Nonequilibrium chromosome looping via molecular slip links
CA Brackley, J Johnson, D Michieletto, AN Morozov, M Nicodemi, ...
Physical review letters 119 (13), 138101, 2017
Jamming phase diagram for frictional particles
MP Ciamarra, R Pastore, M Nicodemi, A Coniglio
Physical Review E 84 (4), 041308, 2011
Dynamical response functions in models of vibrated granular media
M Nicodemi
Physical review letters 82 (19), 3734, 1999
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