HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015 | 19327 | 2015 |
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions D Kim, G Pertea, C Trapnell, H Pimentel, R Kelley, SL Salzberg Genome biology 14, 1-13, 2013 | 13688 | 2013 |
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ... Nature protocols 7 (3), 562-578, 2012 | 13314 | 2012 |
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype D Kim, JM Paggi, C Park, C Bennett, SL Salzberg Nature biotechnology 37 (8), 907-915, 2019 | 9626 | 2019 |
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown M Pertea, D Kim, GM Pertea, JT Leek, SL Salzberg Nature protocols 11 (9), 1650-1667, 2016 | 5541 | 2016 |
Centrifuge: rapid and sensitive classification of metagenomic sequences D Kim, L Song, FP Breitwieser, SL Salzberg Genome research 26 (12), 1721-1729, 2016 | 1356 | 2016 |
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts D Kim, SL Salzberg Genome biology 12, 1-15, 2011 | 924 | 2011 |
Physico-chemical conversion of lignocellulose: inhibitor effects and detoxification strategies: a mini review D Kim Molecules 23 (2), 309, 2018 | 530 | 2018 |
The impact of virtual reality (VR) technology on sport spectators' flow experience and satisfaction D Kim, YJ Ko Computers in human behavior 93, 346-356, 2019 | 518 | 2019 |
Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N Y Zhang, C Park, C Bennett, M Thornton, D Kim Genome Research 31 (7), 1290-1295, 2021 | 208 | 2021 |
A fast spliced aligner with low memory requirements., 2015, 12 D Kim, B Langmead, SLS Hisat DOI: https://doi. org/10.1038/nmeth 3317, 357-360, 0 | 119 | |
Beneficial Effects of Monascus sp. KCCM 10093 Pigments and Derivatives: A Mini Review D Kim, S Ku Molecules 23 (1), 98, 2018 | 114 | 2018 |
Improving well-being through hedonic, eudaimonic, and social needs fulfillment in sport media consumption J Kim, Y Kim, D Kim Sport Management Review 20 (3), 309-321, 2017 | 96 | 2017 |
KDM2B is a histone H3K79 demethylase and induces transcriptional repression via sirtuin-1-mediated chromatin silencing JY Kang, JY Kim, KB Kim, JW Park, H Cho, JY Hahm, YC Chae, D Kim, ... FASEB JOURNAL 32 (10), 5737-5750, 2018 | 95 | 2018 |
Does spectatorship increase happiness? The energy perspective W Jang, YJ Ko, DL Wann, D Kim Journal of Sport Management 31 (4), 333-344, 2017 | 79 | 2017 |
Optimization and scale-up of coffee mucilage fermentation for ethanol production D Orrego, AD Zapata-Zapata, D Kim Energies 11 (4), 786, 2018 | 69 | 2018 |
PRDX6 promotes tumor development via the JAK2/STAT3 pathway in a urethane-induced lung tumor model HM Yun, KR Park, MH Park, DH Kim, MR Jo, JY Kim, EC Kim, SB Han, ... Free Radical Biology and Medicine 80, 136-144, 2015 | 63 | 2015 |
Epidermal growth factor improves the migration and contractility of aged fibroblasts cultured on 3D collagen matrices D Kim, SY Kim, SK Mun, S Rhee, BJ Kim International Journal of Molecular Medicine 35 (4), 1017-1025, 2015 | 62 | 2015 |
Effect of lignin content on cellulolytic saccharification of liquid hot water pretreated sugarcane bagasse RIS Ladeira Ázar, SE Bordignon-Junior, C Laufer, J Specht, D Ferrier, ... Molecules 25 (3), 623, 2020 | 59 | 2020 |
Bioabatement with hemicellulase supplementation to reduce enzymatic hydrolysis inhibitors G Cao, E Ximenes, NN Nichols, SE Frazer, D Kim, MA Cotta, M Ladisch Bioresource technology 190, 412-415, 2015 | 58 | 2015 |