Henk van den Toorn
Henk van den Toorn
Bioinformatician at Biomolecular Mass Spectrometry and Proteomics Group, Utrecht University
Verified email at
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Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry
CK Frese, AFM Altelaar, H van den Toorn, D Nolting, J Griep-Raming, ...
Analytical chemistry 84 (22), 9668-9673, 2012
Personalized proteome profiles of healthy and tumor human colon organoids reveal both individual diversity and basic features of colorectal cancer
A Cristobal, HWP van den Toorn, M van de Wetering, H Clevers, ...
Cell reports 18 (1), 263-274, 2017
Toward an optimized workflow for middle-down proteomics
A Cristobal, F Marino, H Post, HWP van den Toorn, S Mohammed, ...
Analytical chemistry 89 (6), 3318-3325, 2017
Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis
TY Low, S van Heesch, H van den Toorn, P Giansanti, A Cristobal, ...
Cell reports 5 (5), 1469-1478, 2013
The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium
RG Côté, J Griss, JA Dianes, R Wang, JC Wright, HWP van den Toorn, ...
Molecular & Cellular Proteomics 11 (12), 1682-1689, 2012
An augmented multiple-protease-based human phosphopeptide atlas
P Giansanti, TT Aye, H van den Toorn, M Peng, B van Breukelen, ...
Cell reports 11 (11), 1834-1843, 2015
A serum proteome signature to predict mortality in severe COVID-19 patients
F Völlmy, H Van Den Toorn, RZ Chiozzi, O Zucchetti, A Papi, CA Volta, ...
Life Science Alliance 4 (9), 2021
Selectivity in Enrichment of cAMP-dependent Protein Kinase Regulatory Subunits Type I and Type II and Their Interactors Using Modified cAMP Affinity Resins* S
TT Aye, S Mohammed, HWP van den Toorn, TAB van Veen, ...
Molecular & Cellular Proteomics 8 (5), 1016-1028, 2009
Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity
JH Ringrose, HW Van Den Toorn, M Eitel, H Post, P Neerincx, ...
Nature communications 4 (1), 1408, 2013
qcML: an exchange format for quality control metrics from mass spectrometry experiments
M Walzer, LE Pernas, S Nasso, W Bittremieux, S Nahnsen, ...
Molecular & Cellular Proteomics 13 (8), 1905-1913, 2014
Characterization of Biases in Phosphopeptide Enrichment by Ti4+-Immobilized Metal Affinity Chromatography and TiO2 Using a Massive Synthetic Library and …
L Matheron, H van den Toorn, AJR Heck, S Mohammed
Analytical chemistry 86 (16), 8312-8320, 2014
Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides
ML Hennrich, HWP van den Toorn, V Groenewold, AJR Heck, ...
Analytical chemistry 84 (4), 1804-1808, 2012
Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation
ML Hennrich, PJ Boersema, H van den Toorn, N Mischerikow, AJR Heck, ...
Analytical chemistry 81 (18), 7814-7822, 2009
Single-cell derived tumor organoids display diversity in HLA class I peptide presentation
LC Demmers, K Kretzschmar, A Van Hoeck, YE Bar-Epraïm, ...
Nature communications 11 (1), 5338, 2020
StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry
B van Breukelen, HWP van den Toorn, MM Drugan, AJR Heck
Bioinformatics 25 (11), 1472-1473, 2009
Discovery and quantification of nonhuman proteins in human milk
J Zhu, L Garrigues, H Van den Toorn, B Stahl, AJR Heck
Journal of proteome research 18 (1), 225-238, 2018
Benefits of collisional cross section assisted precursor selection (caps-PASEF) for cross-linking mass spectrometry
B Steigenberger, HWP van den Toorn, E Bijl, JF Greisch, O Räther, ...
Molecular & Cellular Proteomics 19 (10), 1677-1687, 2020
RockerBox: analysis and filtering of massive proteomics search results
HWP van den Toorn, J Muñoz, S Mohammed, R Raijmakers, AJR Heck, ...
Journal of proteome research 10 (3), 1420-1424, 2011
Monitoring Human Milk β-Casein Phosphorylation and O-Glycosylation Over Lactation Reveals Distinct Differences between the Proteome and Endogenous …
KA Dingess, I Gazi, HWP van den Toorn, M Mank, B Stahl, KR Reiding, ...
International journal of molecular sciences 22 (15), 8140, 2021
In-depth characterization of the Staphylococcus aureus phosphoproteome reveals new targets of Stk1
N Prust, S van der Laarse, HWP van den Toorn, NM van Sorge, S Lemeer
Molecular & Cellular Proteomics 20, 2021
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