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Sandhya Premnath Tiwari
Sandhya Premnath Tiwari
Department of Biology, Hiroshima University
Verified email at hiroshima-u.ac.jp - Homepage
Title
Cited by
Cited by
Year
WEBnm@ v2. 0: Web server and services for comparing protein flexibility
SP Tiwari, E Fuglebakk, SM Hollup, L Skjærven, T Cragnolini, ...
BMC bioinformatics 15 (1), 1-12, 2014
1202014
Evolution of oligomeric state through allosteric pathways that mimic ligand binding
T Perica, Y Kondo, SP Tiwari, SH McLaughlin, KR Kemplen, X Zhang, ...
Science 346 (6216), 1254346, 2014
772014
Comparing the intrinsic dynamics of multiple protein structures using elastic network models
E Fuglebakk, SP Tiwari, N Reuter
Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (5), 911-922, 2015
762015
Conservation of intrinsic dynamics in proteins—what have computational models taught us?
SP Tiwari, N Reuter
Current opinion in structural biology 50, 75-81, 2018
362018
Integrative/hybrid modeling approaches for studying biomolecules
A Srivastava, SP Tiwari, O Miyashita, F Tama
Journal of molecular biology 432 (9), 2846-2860, 2020
282020
Similarity in shape dictates signature intrinsic dynamics despite no functional conservation in TIM barrel enzymes
SP Tiwari, N Reuter
PLoS computational biology 12 (3), e1004834, 2016
212016
Explicit versus implicit consideration of binding partners in protein–protein complex to elucidate intrinsic dynamics
B Dasgupta, SP Tiwari
Biophysical Reviews, 1-14, 2022
32022
Searching for 3D structural models from a library of biological shapes using a few 2D experimental images
SP Tiwari, F Tama, O Miyashita
BMC bioinformatics 19 (1), 320, 2018
32018
Computational Protocol for Assessing the Optimal Pixel Size to Improve the Accuracy of Single-Particle Cryo-Electron Microscopy Maps
SP Tiwari, S Chhabra, F Tama, O Miyashita
Journal of chemical information and modeling 60 (5), 2570-2580, 2020
22020
Protocol for Retrieving Three-Dimensional Biological Shapes for a Few XFEL Single-Particle Diffraction Patterns
SP Tiwari, F Tama, O Miyashita
Journal of Chemical Information and Modeling 61 (8), 4108-4119, 2021
12021
Comparing Normal Modes of Protein Structures using Webnm@ 2.0
E Fuglebakk, S Tiwari, SM Hollup, L Skjaerven, T Cragnolini, K Tekle, ...
Biophysical Journal 104 (2), 228a, 2013
12013
Examining the Flexibility of Tim Barrel Proteins Based on their Structural Topology
S Tiwari, N Reuter
Biophysical Journal 104 (2), 227a-228a, 2013
12013
Comparing the intrinsic dynamics of multiple proteins using elastic network models reveals global similarities based on their overall shape
S Tiwari, N Reuter
PROTEIN SCIENCE 24, 160-160, 2015
2015
Studying the Role of Protein Flexibility in Allosteric and Evolutionary Changes as Seen in PyrR Protein Family
SP Tiwari, T Perica, Y Kondo, S McLaughlin, A Steward, J Clarke, ...
Biophysical Journal 106 (2), 466a, 2014
2014
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Articles 1–14