Ion Mandoiu

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Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityVerified email at gsu.edu
Pramod K Srivastava PhD MDUniversity of Connecticut School of MedicineVerified email at uchc.edu
Andrew B. KahngProfessor of CSE and ECE, UC San DiegoVerified email at eng.ucsd.edu
Sahar AL SeesiProfessor, Computer Science, Southern Connecticut State UniversityVerified email at southernct.edu
Serghei MangulAssistant Professor at USCVerified email at usc.edu
Pavel SkumsUniversity of ConnecticutVerified email at uconn.edu
Marmar MoussaSchool of Computer Science, Gallogly College of Engineering, University of OklahomaVerified email at ou.edu
Tatiana Shcheglova, PhDResearch AssociateVerified email at uchc.edu
Bassam TorkAssistant Professor of Computer Science, Al-Quds Open UniversityVerified email at qou.edu
Craig NelsonAssociate Professor of Genetics and Genomics, MCB, UCONNVerified email at uconn.edu
Jorge DuitamaUniversidad de los AndesVerified email at uniandes.edu.co
Brian M. BakerDepartment of Chemistry & Biochemistry, University of Notre DameVerified email at nd.edu
James LindsayAssociate Director of Knowledge Systems Group, Dana-Farber Cancer InstituteVerified email at dfci.harvard.edu
Sanguthevar RajasekaranProfessor of Computer Science and Engineering, University of ConnecticutVerified email at engr.uconn.edu
Nicholas MancusoAssociate Professor at Keck School of Medicine, University of Southern CaliforniaVerified email at med.usc.edu
Adrian CaciulaColumbia UniversityVerified email at columbia.edu
Bogdan PasaniucProfessor at UCLAVerified email at ucla.edu
Alexander ArtyomenkoBioinformatics Scientist at Guardant Health Inc.Verified email at guardanthealth.com
Fahad AlqahtaniKing Abdulaziz City for Science and TechnologyVerified email at kacst.edu.sa
Kishori M KonwarComputer Science and Al Lab, Massachusetts Inst. of TechnologyVerified email at mit.edu

Ion Mandoiu

University of Connecticut

Verified email at engr.uconn.edu - Homepage

Algorithms bioinformatics computational genomics immunogenomics


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Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21, 1-35, 2020	1122	2020
Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ... Journal of Experimental Medicine 211 (11), 2231-2248, 2014	451	2014
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ... Cell 183 (3), 818-834. e13, 2020	407	2020
Selecting forwarding neighbors in wireless ad hoc networks G Călinescu, I Măndoiu, PJ Wan, A Zelikovsky Proceedings of the 5th international workshop on Discrete algorithms and …, 2001	262	2001
Estimation of alternative splicing isoform frequencies from RNA-Seq data M Nicolae, S Mangul, II Măndoiu, A Zelikovsky Algorithms for molecular biology 6, 1-13, 2011	260	2011
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development MB Renfree, AT Papenfuss, JE Deakin, J Lindsay, T Heider, K Belov, ... Genome biology 12, 1-26, 2011	209	2011
Inferring viral quasispecies spectra from 454 pyrosequencing reads I Astrovskaya, B Tork, S Mangul, K Westbrooks, I Măndoiu, P Balfe, ... BMC bioinformatics 12, 1-10, 2011	155	2011
Symmetric connectivity with minimum power consumption in radio networks G Călinescu, II Măndoiu, A Zelikovsky Foundations of Information Technology in the Era of Network and Mobile …, 2002	145	2002
Highly scalable algorithms for rectilinear and octilinear Steiner trees AB Kahng, II Măndoiu, AZ Zelikovsky Proceedings of the 2003 Asia and South Pacific Design Automation Conference …, 2003	116	2003
Power efficient range assignment for symmetric connectivity in static ad hoc wireless networks E Althaus, G Călinescu, II Măndoiu, S Prasad, N Tchervenski, ... Wireless Networks 12, 287-299, 2006	112	2006
Power efficient range assignment in ad-hoc wireless networks E Althaus, G Calinescu, II Mandoiu, S Prasad, N Tchervenski, ... 2003 IEEE Wireless Communications and Networking, 2003. WCNC 2003. 3, 1889-1894, 2003	109	2003
Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006	101*	2006
Identification of mammalian orthologs using local synteny J Jun, II Mandoiu, CE Nelson BMC genomics 10, 1-13, 2009	91	2009
Non-tree routing for reliability and yield improvement AB Kahng, B Liu, II Mǎandoiu Proceedings of the 2002 IEEE/ACM international conference on Computer-aided …, 2002	81	2002
The Y architecture for on-chip interconnect: analysis and methodology H Chen, CK Cheng, AB Kahng, II Mandoiu, Q Wang, B Yao IEEE Transactions on Computer-Aided Design of Integrated Circuits and …, 2005	73	2005
Area under the curve as a tool to measure kinetics of tumor growth in experimental animals F Duan, S Simeone, R Wu, J Grady, I Mandoiu, PK Srivastava Journal of immunological methods 382 (1-2), 224-228, 2012	71	2012
Bootstrap-based differential gene expression analysis for RNA-Seq data with and without replicates S Al Seesi, YT Tiagueu, A Zelikovsky, II Măndoiu BMC genomics 15, 1-10, 2014	65	2014
Mass spectrometry–driven exploration reveals nuances of neoepitope-driven tumor rejection H Ebrahimi-Nik, J Michaux, WL Corwin, GLJ Keller, T Shcheglova, ... JCI insight 4 (14), 2019	64	2019
DNA-BAR: distinguisher selection for DNA barcoding B DasGupta, KM Konwar, II Măndoiu, AA Shvartsman Bioinformatics 21 (16), 3424-3426, 2005	63	2005
Minimum multicolored subgraph problem in multiplex PCR primer set selection and population haplotyping MT Hajiaghayi, K Jain, LC Lau, II Măndoiu, A Russell, VV Vazirani Computational Science–ICCS 2006: 6th International Conference, Reading, UK …, 2006	62*	2006

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