Jorge Moura de Sousa
Jorge Moura de Sousa
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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
M Touchon, JAM de Sousa, EPC Rocha
Current Opinion in Microbiology 38, 66-73, 2017
Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
M Touchon, A Perrin, JAM de Sousa, B Vangchhia, S Burn, CL O’Brien, ...
Plos Genetics 16 (6), e1008866, 2020
The Genetic Basis of Escherichia coli Pathoadaptation to Macrophages
M Miskinyte, A Sousa, RS Ramiro, JAM de Sousa, J Kotlinowski, ...
PLOS Pathogens 9 (12), e1003802, 2013
Multidrug-resistant bacteria compensate for the epistasis between resistances
J Moura de Sousa, R Balbontín, P Durão, I Gordo
PLoS biology 15 (4), e2001741, 2017
Bacteriophages benefit from generalized transduction
A Fillol-Salom, A Alsaadi, JAM Sousa, L Zhong, KR Foster, EPC Rocha, ...
PLoS pathogens 15 (7), e1007888, 2019
Bacteria have numerous distinctive groups of phage–plasmids with conserved phage and variable plasmid gene repertoires
E Pfeifer, JA Moura de Sousa, M Touchon, EPC Rocha
Nucleic Acids Research 49 (5), 2655-2673, 2021
Environmental structure drives resistance to phages and antibiotics during phage therapy and to invading lysogens during colonisation
JAM de Sousa, EPC Rocha
Scientific reports 9 (1), 1-13, 2019
Genetic exchanges are more frequent in bacteria encoding capsules
O Rendueles, JAM de Sousa, A Bernheim, M Touchon, EPC Rocha
PLOS Genetics 14 (12), e1007862, 2018
Causes and consequences of bacteriophage diversification via genetic exchanges across lifestyles and bacterial taxa
JA Moura de Sousa, E Pfeifer, M Touchon, EPC Rocha
Molecular biology and evolution 38 (6), 2497-2512, 2021
Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation
JAM de Sousa, A Buffet, M Haudiquet, EPC Rocha, O Rendueles
The ISME Journal 14 (12), 2980-2996, 2020
Potential for adaptation overrides cost of resistance
J Moura de Sousa, A Sousa, C Bourgard, I Gordo
Future microbiology 10 (9), 1415-1431, 2015
An ABC method for estimating the rate and distribution of effects of beneficial mutations
JA Moura de Sousa, PRA Campos, I Gordo
Genome biology and evolution 5 (5), 794-806, 2013
Trade-Offs of Escherichia coli Adaptation to an Intracellular Lifestyle in Macrophages
M Azevedo, A Sousa, J Moura de Sousa, JA Thompson, JT Proença, ...
PloS one 11 (1), e0146123, 2016
Designing an Epigenetic Approach in Artificial Life: The EpiAL Model
JAB Sousa, E Costa
Agents and Artificial Intelligence, 78-90, 2010
To catch a hijacker: abundance, evolution and genetic diversity of P4-like bacteriophage satellites
JA Moura de Sousa, EPC Rocha
Philosophical Transactions of the Royal Society B 377 (1842), 20200475, 2022
Competition and fixation of cohorts of adaptive mutations under Fisher geometrical model
JAM de Sousa, J Alpedrinha, PRA Campos, I Gordo
PeerJ 4, e2256, 2016
Epial-an epigenetic approach for an artificial life model
J Sousa, E Costa
International Conference on Agents and Artificial Intelligence 2, 90-97, 2010
People as Ants: A Multi Pheromone Ubiquitous Approach for Intelligent Transport Systems
J Sousa, C Bento
3rd Symposium of Ubiquitous Computing and Ambient Intelligence 2008, 321-325, 2009
Selfish, promiscuous, and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations
E Rocha, M Haudiquet, JM de Sousa, M Touchon
EcoEvoRxiv, 2021
A stem-cell ageing hypothesis on the origin of Parkinson's disease
A Valente, J Sousa, T Outeiro, L Ferreira
Nature Precedings, 1-1, 2010
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