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Guido Zampieri
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Machine and deep learning meet genome-scale metabolic modeling
G Zampieri, S Vijayakumar, E Yaneske, C Angione
PLoS computational biology 15 (7), e1007084, 2019
1722019
A mechanism-aware and multiomic machine-learning pipeline characterizes yeast cell growth
C Culley, S Vijayakumar, G Zampieri, C Angione
Proceedings of the National Academy of Sciences 117 (31), 18869-18879, 2020
482020
Revealing metabolic mechanisms of interaction in the anaerobic digestion microbiome by flux balance analysis
A Basile, S Campanaro, A Kovalovszki, G Zampieri, A Rossi, I Angelidaki, ...
Metabolic Engineering 62, 138-149, 2020
322020
Scuba: scalable kernel-based gene prioritization
G Zampieri, DV Tran, M Donini, N Navarin, F Aiolli, A Sperduti, G Valle
BMC bioinformatics 19, 1-12, 2018
202018
Integrating genome-scale metabolic modelling and transfer learning for human gene regulatory network reconstruction
G Pio, P Mignone, G Magazz¨, G Zampieri, M Ceci, C Angione
Bioinformatics 38 (2), 487-493, 2022
182022
Multimodal regularized linear models with flux balance analysis for mechanistic integration of omics data
G Magazz¨, G Zampieri, C Angione
Bioinformatics 37 (20), 3546-3552, 2021
152021
Setup and validation of a targeted next-generation sequencing approach for the diagnosis of lysosomal storage disorders
A Zanetti, F D'Avanzo, L Bertoldi, G Zampieri, E Feltrin, F De Pascale, ...
The Journal of Molecular Diagnostics 22 (4), 488-502, 2020
152020
Genome‐scale metabolic modelling of SARS‐CoV‐2 in cancer cells reveals an increased shift to glycolytic energy production
E Yaneske, G Zampieri, L Bertoldi, G Benvenuto, C Angione
FEBS letters 595 (18), 2350-2365, 2021
102021
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation
N De Bernardini, A Basile, G Zampieri, A Kovalovszki, B De Diego Diaz, ...
Microbiome 10 (1), 1-18, 2022
92022
A poly-omics machine-learning method to predict metabolite production in CHO cells
G Zampieri, M Coggins, G Valle, C Angione
2nd International Electronic Conference of Metabolomics, 2017
72017
KEMET–A python tool for KEGG Module evaluation and microbial genome annotation expansion
M Pal¨, A Basile, G Zampieri, L Treu, A Rossi, MS Morlino, S Campanaro
Computational and Structural Biotechnology Journal 20, 1481-1486, 2022
52022
Modeling Customer Experience in a Contact Center through Process Log Mining
T Fu, G Zampieri, D Hodgson, C Angione, Y Zeng
ACM Transactions on Intelligent Systems and Technology (TIST) 12 (4), 1-21, 2021
32021
Multi-dimensional experimental and computational exploration of metabolism pinpoints complex probiotic interactions
G Zampieri, G Efthimiou, C Angione
Metabolic Engineering 76, 120-132, 2023
12023
Metatranscriptomics-guided genome-scale metabolic modeling of microbial communities
G Zampieri, S Campanaro, C Angione, L Treu
Cell Reports Methods, 100383, 2023
12023
Combining metabolic modelling with machine learning accurately predicts yeast growth rate
C Culley, S Vijayakumar, G Zampieri, C Angione
11th International Workshop on Bio-Design Automation, 2019
12019
Clinical stratification improves the diagnostic accuracy of small omics datasets within machine learning and genome-scale metabolic modelling methods
G Magazz¨, G Zampieri, C Angione
Computers in Biology and Medicine 151, 106244, 2022
2022
Exploring full-scale biogas inoculants to boost biogas production from different organic waste streams
S Agostini, G Zampieri, B MŘller, F Sibilla, S Campanaro, L Treu, L Favaro
44th Symposium on Biomaterials, Fuels and Chemicals, 2022
2022
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO
N De Bernardini, A Basile, G Zampieri, A Kovalovszki, BDD Diaz, E Offer, ...
2022
Genome Sequencing Variations in the Octodon degus, an Unconventional Natural Model of Aging and Alzheimer's Disease
MJ Hurley, C Urra, BM Garduno, A Bruno, A Kimbell, B Wilkinson, ...
Frontiers in Aging Neuroscience 14, 2022
2022
NEMETEX: a Python software for the visualisation of the network of metabolic exchanges
M Palamin, A Frisinghelli, E Offer, G Zampieri, A Basile, S Campanaro
bioRxiv, 2022.10. 19.492777, 2022
2022
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Articles 1–20