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Jia Ren
Jia Ren
Verified email at udel.edu
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Cited by
Year
iPTMnet: an integrated resource for protein post-translational modification network discovery
H Huang, CN Arighi, KE Ross, J Ren, G Li, SC Chen, Q Wang, J Cowart, ...
Nucleic acids research 46 (D1), D542-D550, 2018
1192018
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities
DA Natale, CN Arighi, JA Blake, J Bona, C Chen, SC Chen, KR Christie, ...
Nucleic acids research 45 (D1), D339-D346, 2017
902017
Protein Ontology: a controlled structured network of protein entities
DA Natale, CN Arighi, JA Blake, CJ Bult, KR Christie, J Cowart, ...
Nucleic acids research 42 (D1), D415-D421, 2014
872014
iPTMnet: integrative bioinformatics for studying PTM networks
KE Ross, H Huang, J Ren, CN Arighi, G Li, CO Tudor, M Lv, JY Lee, ...
Protein bioinformatics: from Protein modifications and networks to …, 2017
342017
iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature
J Ren, G Li, K Ross, C Arighi, P McGarvey, S Rao, J Cowart, S Madhavan, ...
Database 2018, bay128, 2018
232018
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint
KE Ross, CN Arighi, J Ren, H Huang, CH Wu
Database 2013, 2013
232013
WebGIVI: a web-based gene enrichment analysis and visualization tool
L Sun, Y Zhu, ASMA Mahmood, CO Tudor, J Ren, K Vijay-Shanker, ...
BMC bioinformatics 18, 1-10, 2017
172017
Polygenic inheritance of cryptorchidism susceptibility in the LE/orl rat
JS Barthold, J Pugarelli, ML MacDonald, J Ren, MO Adetunji, SW Polson, ...
MHR: Basic science of reproductive medicine 22 (1), 18-34, 2016
132016
Analysis of protein phosphorylation and its functional impact on protein–protein interactions via text mining of the scientific literature
Q Wang, KE Ross, H Huang, J Ren, G Li, K Vijay-Shanker, CH Wu, ...
Protein Bioinformatics: From Protein Modifications and Networks to …, 2017
102017
Use of the protein ontology for multi-faceted analysis of biological processes: a case study of the spindle checkpoint
KE Ross, CN Arighi, J Ren, DA Natale, H Huang, CH Wu
Frontiers in Genetics 4, 62, 2013
72013
Scalable text mining assisted curation of post-translationally modified proteoforms in the protein ontology
KE Ross, DA Natale, C Arighi, SC Chen, H Huang, G Li, J Ren, M Wang, ...
CEUR workshop proceedings 1747, 2016
12016
Improve large-scale automatic information extraction for biomedical knowledge discovery and curation
J Ren
University of Delaware, 2020
2020
IPTMNET: AN INTEGRATED RESOURCE FOR PROTEIN POST-TRANSLATIONAL MODIFICATION NETWORK DISCOVERY
C Arighi, H Huang, K Ross, JI Ren, J Cowart, S Gavali, Q Wang, ...
PROTEIN SCIENCE 28, 138-138, 2019
2019
Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine
C Chen, JE Cowart, J Ren, S Gavali, Y Wang, H Huang, CH Wu, ...
Proceedings of the 2018 ACM International Conference on Bioinformatics …, 2018
2018
iPTMnet visualization with Cytoscape Web
J Ren
University of Delaware, 2013
2013
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