Gary Bader

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Ruth IsserlinDonnelly Centre, University of TorontoVerified email at utoronto.ca
Christopher HogueIndependentVerified email at blueprint.org
Charles BooneProfessor, Donnelly Centre, University of TorontoVerified email at utoronto.ca
Quaid MorrisComputational and Systems Biology Program, Memorial Sloan Kettering Cancer CenterVerified email at mskcc.org
Max FranzUniversity of TorontoVerified email at utoronto.ca
Chris SanderHarvard Medical School, Broad Institute, Dana-Farber Cancer Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Daniele MericoVevo Tx / TCAG (SickKids)Verified email at vevo.ai
Brenda AndrewsDirector, The Donnelly Centre, University of TorontoVerified email at utoronto.ca
John E. DickUniversity of TorontoVerified email at uhnresearch.ca
John H MorrisUCSFVerified email at cgl.ucsf.edu
Emek DemirOHSUVerified email at ohsu.edu
Mike TyersThe Hospital for Sick ChildrenVerified email at sickkids.ca
Andrew EmiliBoston University (formerly University of Toronto)Verified email at bu.edu
Alexander R PicoGladstone InstitutesVerified email at gladstone.ucsf.edu
Amy TongUniversity of TorontoVerified email at utoronto.ca
Igor RodchenkovUniversity of TorontoVerified email at utoronto.ca
Jeff LiuUniversity Health NetworkVerified email at utoronto.ca
Brendan T InnesUniversity of TorontoVerified email at mail.utoronto.ca
Özgün BaburAssistant Professor at University of Massachusetts BostonVerified email at umb.edu
Philip M. KimProfessor, University of TorontoVerified email at kimlab.org

Gary Bader

Professor of Molecular Genetics and Computer Science, The Donnelly Centre, University of Toronto

Verified email at utoronto.ca - Homepage

Computational Biology Systems Biology


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An automated method for finding molecular complexes in large protein interaction networks GD Bader, CWV Hogue BMC bioinformatics 4 (1), 1-27, 2003	5325	2003
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry Y Ho, A Gruhler, A Heilbut, GD Bader, L Moore, SL Adams, A Millar, ... Nature 415 (6868), 180-183, 2002	4520	2002
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function D Warde-Farley, SL Donaldson, O Comes, K Zuberi, R Badrawi, P Chao, ... Nucleic acids research 38 (suppl_2), W214-W220, 2010	3559	2010
Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007	2608	2007
Systematic genetic analysis with ordered arrays of yeast deletion mutants AHY Tong, M Evangelista, AB Parsons, H Xu, GD Bader, N Pagé, ... Science 294 (5550), 2364-2368, 2001	2499	2001
Global mapping of the yeast genetic interaction network AHY Tong, G Lesage, GD Bader, H Ding, H Xu, X Xin, J Young, GF Berriz, ... science 303 (5659), 808-813, 2004	2472	2004
The genetic landscape of a cell M Costanzo, A Baryshnikova, J Bellay, Y Kim, ED Spear, CS Sevier, ... science 327 (5964), 425-431, 2010	2408	2010
A draft map of the human proteome MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda, R Chaerkady, ... Nature 509 (7502), 575-581, 2014	2271	2014
Functional impact of global rare copy number variation in autism spectrum disorders D Pinto, AT Pagnamenta, L Klei, R Anney, D Merico, R Regan, J Conroy, ... Nature 466 (7304), 368-372, 2010	2206	2010
International network of cancer genome projects Data coordination centre Kasprzyk (Leader) Arek 1 Stein (Leader) Lincoln D ... Nature 464 (7291), 993-998, 2010	2142	2010
Enrichment map: a network-based method for gene-set enrichment visualization and interpretation D Merico, R Isserlin, O Stueker, A Emili, GD Bader PloS one 5 (11), e13984, 2010	1945	2010
BIND: the biomolecular interaction network database GD Bader, D Betel, CWV Hogue Nucleic acids research 31 (1), 248-250, 2003	1539	2003
A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069-1076, 2012	1394	2012
Pathway Commons, a web resource for biological pathway data EG Cerami, BE Gross, E Demir, I Rodchenkov, Ö Babur, N Anwar, ... Nucleic acids research 39 (suppl_1), D685-D690, 2010	1202	2010
Association analysis identifies 65 new breast cancer risk loci K Michailidou, S Lindström, J Dennis, J Beesley, S Hui, S Kar, A Lemaçon, ... Nature 551 (7678), 92-94, 2017	1119	2017
Bioinformatics AD Baxevanis, GD Bader, DS Wishart John Wiley & Sons, 2020	1112	2020
Pathway enrichment analysis and visualization of omics data using g:Profiler, GSEA, Cytoscape and EnrichmentMap Nature Protocols 14, 482–517, 2019	1057	2019
Molecular classification of ependymal tumors across all CNS compartments, histopathological grades, and age groups KW Pajtler, H Witt, M Sill, DTW Jones, V Hovestadt, F Kratochwil, K Wani, ... Cancer cell 27 (5), 728-743, 2015	945	2015
Intertumoral heterogeneity within medulloblastoma subgroups FMG Cavalli, M Remke, L Rampasek, J Peacock, DJH Shih, B Luu, ... Cancer cell 31 (6), 737-754. e6, 2017	888	2017
A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules AHY Tong, B Drees, G Nardelli, GD Bader, B Brannetti, L Castagnoli, ... Science 295 (5553), 321-324, 2002	888	2002

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