Allison Creason
Allison Creason
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The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging
D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ...
Nature methods 19 (3), 311-315, 2022
The ABCs and 123s of bacterial secretion systems in plant pathogenesis
JH Chang, D Desveaux, AL Creason
Annual review of phytopathology 52, 317-345, 2014
Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum
JA Kimbrel, WJ Thomas, Y Jiang, AL Creason, CA Thireault, JL Sachs, ...
PLoS pathogens 9 (2), e1003204, 2013
Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management
EA Savory, SL Fuller, AJ Weisberg, WJ Thomas, MI Gordon, DM Stevens, ...
Elife 6, e30925, 2017
An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6
JA Kimbrel, SA Givan, AB Halgren, AL Creason, DI Mills, GM Banowetz, ...
BMC genomics 11, 1-15, 2010
The Pseudomonas syringae Type III Effector HopG1 Induces Actin Remodeling to Promote Symptom Development and Susceptibility during Infection
M Shimono, YJ Lu, K Porter, BH Kvitko, J Henty-Ridilla, A Creason, SY He, ...
Plant physiology 171 (3), 2239-2255, 2016
Preconception carrier screening by genome sequencing: results from the clinical laboratory
S Punj, Y Akkari, J Huang, F Yang, A Creason, C Pak, A Potter, ...
The American Journal of Human Genetics 102 (6), 1078-1089, 2018
Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci
AL Creason, OM Vandeputte, EA Savory, EW Davis, ML Putnam, E Hu, ...
PLoS One 9 (7), e101996, 2014
Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus
AL Creason, EW Davis, ML Putnam, OM Vandeputte, JH Chang
Frontiers in Plant Science 5, 406, 2014
Phase Ib dose expansion and translational analyses of olaparib in combination with capivasertib in recurrent endometrial, triple-negative breast, and ovarian cancer
SN Westin, M Labrie, JK Litton, A Blucher, Y Fang, CP Vellano, ...
Clinical Cancer Research 27 (23), 6354-6365, 2021
An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer
BE Johnson, AL Creason, JM Stommel, JM Keck, S Parmar, CB Betts, ...
Cell Reports Medicine 3 (2), 100525, 2022
Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges
K Ellrott, A Buchanan, A Creason, M Mason, T Schaffter, B Hoff, J Eddy, ...
Genome biology 20, 1-9, 2019
Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics
A Li, JM Keck, S Parmar, J Patterson, M Labrie, AL Creason, BE Johnson, ...
NPJ precision oncology 5 (1), 28, 2021
Genome sequencing and transposon mutagenesis of Burkholderia seminalis TC3. 4.2 R3 identify genes contributing to suppression of orchid necrosis caused by B. gladioli
WL Araújo, AL Creason, ET Mano, AA Camargo-Neves, SN Minami, ...
Molecular Plant-Microbe Interactions 29 (6), 435-446, 2016
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ...
Cell systems 12 (8), 827-838. e5, 2021
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine
Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ...
PLoS computational biology 17 (6), e1009014, 2021
Phytopathogenic Rhodococcus Have Diverse Plasmids With Few Conserved Virulence Functions
EA Savory, AJ Weisberg, DM Stevens, AL Creason, SL Fuller, EM Pearce, ...
Frontiers in Microbiology 11, 1022, 2020
Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies
M Labrie, A Li, A Creason, C Betts, J Keck, B Johnson, S Sivagnanam, ...
NPJ precision oncology 5 (1), 92, 2021
An integrated clinical, omic, and image atlas of an evolving metastatic breast cancer
BE Johnson, AL Creason, JM Stommel, J Keck, S Parmar, CB Betts, ...
bioRxiv, 2020
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