| The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 442 | 2020 |
| MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging D Schapiro, A Sokolov, C Yapp, YA Chen, JL Muhlich, J Hess, ... Nature methods 19 (3), 311-315, 2022 | 159 | 2022 |
| The ABCs and 123s of bacterial secretion systems in plant pathogenesis JH Chang, D Desveaux, AL Creason Annual review of phytopathology 52 (1), 317-345, 2014 | 113 | 2014 |
| Mutualistic Co-evolution of Type III Effector Genes in Sinorhizobium fredii and Bradyrhizobium japonicum JA Kimbrel, WJ Thomas, Y Jiang, AL Creason, CA Thireault, JL Sachs, ... PLoS Pathogens 9 (2), e1003204, 2013 | 80 | 2013 |
| Evolutionary transitions between beneficial and phytopathogenic Rhodococcus challenge disease management EA Savory, SL Fuller, AJ Weisberg, WJ Thomas, MI Gordon, DM Stevens, ... Elife 6, e30925, 2017 | 73 | 2017 |
| An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6 JA Kimbrel, SA Givan, AB Halgren, AL Creason, DI Mills, GM Banowetz, ... BMC genomics 11, 1-15, 2010 | 69 | 2010 |
| The Pseudomonas syringae Type III Effector HopG1 Induces Actin Remodeling to Promote Symptom Development and Susceptibility during Infection M Shimono, YJ Lu, K Porter, BH Kvitko, J Henty-Ridilla, A Creason, SY He, ... Plant physiology 171 (3), 2239-2255, 2016 | 68 | 2016 |
| Preconception carrier screening by genome sequencing: results from the clinical laboratory S Punj, Y Akkari, J Huang, F Yang, A Creason, C Pak, A Potter, ... The American Journal of Human Genetics 102 (6), 1078-1089, 2018 | 53 | 2018 |
| Phase Ib dose expansion and translational analyses of olaparib in combination with capivasertib in recurrent endometrial, triple-negative breast, and ovarian cancer SN Westin, M Labrie, JK Litton, A Blucher, Y Fang, CP Vellano, ... Clinical Cancer Research 27 (23), 6354-6365, 2021 | 48 | 2021 |
| Analysis of Genome Sequences from Plant Pathogenic Rhodococcus Reveals Genetic Novelties in Virulence Loci AL Creason, OM Vandeputte, EA Savory, EW Davis, ML Putnam, E Hu, ... PLoS One 9 (7), e101996, 2014 | 48 | 2014 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 44 | 2020 |
| Use of whole genome sequences to develop a molecular phylogenetic framework for Rhodococcus fascians and the Rhodococcus genus AL Creason, EW Davis, ML Putnam, OM Vandeputte, JH Chang Frontiers in plant science 5, 406, 2014 | 39 | 2014 |
| An omic and multidimensional spatial atlas from serial biopsies of an evolving metastatic breast cancer BE Johnson, AL Creason, JM Stommel, JM Keck, S Parmar, CB Betts, ... Cell Reports Medicine 3 (2), 100525, 2022 | 37 | 2022 |
| A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery A Creason, D Haan, K Dang, KE Chiotti, M Inkman, A Lamb, T Yu, Y Hu, ... Cell systems 12 (8), 827-838. e5, 2021 | 28 | 2021 |
| Characterizing advanced breast cancer heterogeneity and treatment resistance through serial biopsies and comprehensive analytics A Li, JM Keck, S Parmar, J Patterson, M Labrie, AL Creason, BE Johnson, ... NPJ precision oncology 5 (1), 28, 2021 | 28 | 2021 |
| Reproducible biomedical benchmarking in the cloud: lessons from crowd-sourced data challenges K Ellrott, A Buchanan, A Creason, M Mason, T Schaffter, B Hoff, J Eddy, ... Genome biology 20, 1-9, 2019 | 27 | 2019 |
| Genome sequencing and transposon mutagenesis of Burkholderia seminalis TC3. 4.2 R3 identify genes contributing to suppression of orchid necrosis caused by B. gladioli WL Araújo, AL Creason, ET Mano, AA Camargo-Neves, SN Minami, ... Molecular Plant-Microbe Interactions 29 (6), 435-446, 2016 | 22 | 2016 |
| Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine Q Gu, A Kumar, S Bray, A Creason, A Khanteymoori, V Jalili, B Grüning, ... PLoS computational biology 17 (6), e1009014, 2021 | 21 | 2021 |
| Phytopathogenic Rhodococcus Have Diverse Plasmids With Few Conserved Virulence Functions EA Savory, AJ Weisberg, DM Stevens, AL Creason, SL Fuller, EM Pearce, ... Frontiers in Microbiology 11, 1022, 2020 | 18 | 2020 |
| Multiomics analysis of serial PARP inhibitor treated metastatic TNBC inform on rational combination therapies M Labrie, A Li, A Creason, C Betts, J Keck, B Johnson, S Sivagnanam, ... NPJ precision oncology 5 (1), 92, 2021 | 16 | 2021 |
