Reija Autio
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Copy number variation and selection during reprogramming to pluripotency
SM Hussein, NN Batada, S Vuoristo, RW Ching, R Autio, E Närvä, S Ng, ...
Nature 471 (7336), 58-62, 2011
Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues
S Kilpinen, R Autio, K Ojala, K Iljin, E Bucher, H Sara, T Pisto, M Saarela, ...
Genome biology 9 (9), 1-14, 2008
High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity
E Närvä, R Autio, N Rahkonen, L Kong, N Harrison, D Kitsberg, ...
Nature biotechnology 28 (4), 371-377, 2010
CGH-Plotter: MATLAB toolbox for CGH-data analysis
R Autio, S Hautaniemi, P Kauraniemi, O Yli-Harja, J Astola, M Wolf, ...
Bioinformatics 19 (13), 1714-1715, 2003
High‐resolution copy number and gene expression microarray analyses of head and neck squamous cell carcinoma cell lines of tongue and larynx
AK Järvinen, R Autio, S Kilpinen, M Saarela, I Leivo, R Grénman, ...
Genes, Chromosomes and Cancer 47 (6), 500-509, 2008
Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses
AK Järvinen, R Autio, S Haapa-Paananen, M Wolf, M Saarela, ...
Oncogene 25 (52), 6997-7008, 2006
Gene expression profiling of immune-competent human cells exposed to engineered zinc oxide or titanium dioxide nanoparticles
S Tuomela, R Autio, T Buerki-Thurnherr, O Arslan, A Kunzmann, ...
PloS one 8 (7), e68415, 2013
Novel genomic aberrations in testicular germ cell tumors by array-CGH, and associated gene expression changes
RI Skotheim, R Autio, GE Lind, SM Kraggerud, PW Andrews, O Monni, ...
Analytical Cellular Pathology 28 (5-6), 315-326, 2006
Integrated gene copy number and expression microarray analysis of gastric cancer highlights potential target genes
S Myllykangas, S Junnila, A Kokkola, R Autio, I Scheinin, T Kiviluoto, ...
International journal of cancer 123 (4), 817-825, 2008
Bioactive glass ions as strong enhancers of osteogenic differentiation in human adipose stem cells
M Ojansivu, S Vanhatupa, L Björkvik, H Häkkänen, M Kellomäki, R Autio, ...
Acta biomaterialia 21, 190-203, 2015
Effects of Herceptin treatment on global gene expression patterns in HER2-amplified and nonamplified breast cancer cell lines
P Kauraniemi, S Hautaniemi, R Autio, J Astola, O Monni, A Elkahloun, ...
Oncogene 23 (4), 1010-1013, 2004
Serum metabolic profiles in overweight and obese women with and without metabolic syndrome
PK Wiklund, S Pekkala, R Autio, E Munukka, L Xu, J Saltevo, SM Cheng, ...
Diabetology & metabolic syndrome 6 (1), 1-9, 2014
RNA‐Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self‐Renewal and Cancer Cell Proliferation
E Närvä, N Rahkonen, MR Emani, R Lund, JP Pursiheimo, J Nästi, ...
Stem cells 30 (3), 452-460, 2012
Adipose tissue dysfunction and altered systemic amino acid metabolism are associated with non-alcoholic fatty liver disease
S Cheng, P Wiklund, R Autio, R Borra, X Ojanen, L Xu, T Törmäkangas, ...
PloS one 10 (10), e0138889, 2015
Bone morphogenetic protein-2 induces donor-dependent osteogenic and adipogenic differentiation in human adipose stem cells
S Vanhatupa, M Ojansivu, R Autio, M Juntunen, S Miettinen
Stem cells translational medicine 4 (12), 1391-1402, 2015
Toll‐like receptor 5 in obesity: The role of gut microbiota and adipose tissue inflammation
S Pekkala, E Munukka, L Kong, E Pöllänen, R Autio, C Roos, P Wiklund, ...
Obesity 23 (3), 581-590, 2015
Macrophage sensing of single-walled carbon nanotubes via Toll-like receptors
SP Mukherjee, O Bondarenko, P Kohonen, FT Andón, T Brzicová, ...
Scientific reports 8 (1), 1115, 2018
Insulin resistance is associated with altered amino acid metabolism and adipose tissue dysfunction in normoglycemic women
P Wiklund, X Zhang, S Pekkala, R Autio, L Kong, Y Yang, ...
Scientific reports 6 (1), 1-11, 2016
Comparison of Affymetrix data normalization methods using 6,926 experiments across five array generations
R Autio, S Kilpinen, M Saarela, O Kallioniemi, S Hautaniemi, J Astola
BMC bioinformatics 10 (1), 1-12, 2009
Imbalance of bacteriome profiles within the Finnish Diabetes Prediction and Prevention study: Parallel use of 16S profiling and virome sequencing in stool samples from children …
O Cinek, L Kramna, J Lin, S Oikarinen, K Kolarova, J Ilonen, O Simell, ...
Pediatric diabetes 18 (7), 588-598, 2017
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