Duygu Dikicioglu
Duygu Dikicioglu
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Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains
AB Canelas, N Harrison, A Fazio, J Zhang, JP Pitkänen, J Van Den Brink, ...
Nature communications 1 (1), 145, 2010
Biomass composition: the “elephant in the room” of metabolic modelling
D Dikicioglu, B Kırdar, SG Oliver
Metabolomics 11, 1690-1701, 2015
A novel strategy for selection and validation of reference genes in dynamic multidimensional experimental design in yeast
A Cankorur-Cetinkaya, E Dereli, S Eraslan, E Karabekmez, D Dikicioglu, ...
PloS one 7 (6), e38351, 2012
How yeast re-programmes its transcriptional profile in response to different nutrient impulses
D Dikicioglu, E Karabekmez, B Rash, P Pir, B Kirdar, SG Oliver
BMC systems biology 5, 1-16, 2011
Improving functional annotation for industrial microbes: a case study with Pichia pastoris
D Dikicioglu, V Wood, KM Rutherford, MD McDowall, SG Oliver
Trends in biotechnology 32 (8), 396-399, 2014
Recombinant expression of insoluble enzymes in Escherichia coli: a systematic review of experimental design and its manufacturing implications
S Mital, G Christie, D Dikicioglu
Microbial cell factories 20, 1-20, 2021
Integration of metabolic modeling and phenotypic data in evaluation and improvement of ethanol production using respiration-deficient mutants of Saccharomyces cerevisiae
D Dikicioglu, P Pir, ZI Onsan, KO Ulgen, B Kirdar, SG Oliver
Applied and Environmental Microbiology 74 (18), 5809-5816, 2008
Enhancing the functionality of a microscale bioreactor system as an industrial process development tool for mammalian perfusion culture
DJ Sewell, R Turner, R Field, W Holmes, R Pradhan, C Spencer, ...
Biotechnology and Bioengineering 116 (6), 1315-1325, 2019
Predicting complex phenotype–genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory
D Dikicioglu, P Pir, SG Oliver
Biotechnology journal 8 (9), 1017-1034, 2013
Dynamic proteomic profiling of extra-embryonic endoderm differentiation in mouse embryonic stem cells
CM Mulvey, C Schröter, L Gatto, D Dikicioglu, IB Fidaner, A Christoforou, ...
Stem Cells 33 (9), 2712-2725, 2015
Automated liquid-handling operations for robust, resilient, and efficient bio-based laboratory practices
MA Torres-Acosta, GJ Lye, D Dikicioglu
Biochemical Engineering Journal 188, 108713, 2022
Extension of the yeast metabolic model to include iron metabolism and its use to estimate global levels of iron‐recruiting enzyme abundance from cofactor requirements
D Dikicioglu, SG Oliver
Biotechnology and Bioengineering 116 (3), 610-621, 2019
Metabolic modeling to identify engineering targets for Komagataella phaffii: The effect of biomass composition on gene target identification
A Cankorur‐Cetinkaya, D Dikicioglu, SG Oliver
Biotechnology and bioengineering 114 (11), 2605-2615, 2017
Metaheuristic approaches in biopharmaceutical process development data analysis
N Gangadharan, R Turner, R Field, SG Oliver, N Slater, D Dikicioglu
Bioprocess and biosystems engineering 42, 1399-1408, 2019
A heuristic approach to handling missing data in biologics manufacturing databases
J Mante, N Gangadharan, DJ Sewell, R Turner, R Field, SG Oliver, ...
Bioprocess and biosystems engineering 42, 657-663, 2019
Saccharomyces cerevisiae adapted to grow in the presence of low-dose rapamycin exhibit altered amino acid metabolism
D Dikicioglu, E Dereli Eke, S Eraslan, SG Oliver, B Kirdar
Cell Communication and Signaling 16, 1-13, 2018
Handling variability and incompleteness of biological data by flexible nets: a case study for Wilson disease
J Júlvez, D Dikicioglu, SG Oliver
npj Systems Biology and Applications 4 (1), 7, 2018
Data intelligence for process performance prediction in biologics manufacturing
N Gangadharan, D Sewell, R Turner, R Field, M Cheeks, SG Oliver, ...
Computers & Chemical Engineering 146, 107226, 2021
Computer-aided strategies for determining the amino acid composition of medium for Chinese hamster ovary cell-based biomanufacturing platforms
B Traustason, M Cheeks, D Dikicioglu
International journal of molecular sciences 20 (21), 5464, 2019
Yeast cells with impaired drug resistance accumulate glycerol and glucose
D Dikicioglu, S Oc, BM Rash, WB Dunn, P Pir, DB Kell, B Kirdar, SG Oliver
Molecular BioSystems 10 (1), 93-102, 2014
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