| T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension P Di Tommaso, S Moretti, I Xenarios, M Orobitg, A Montanyola, JM Chang, ... Nucleic acids research 39 (suppl_2), W13-W17, 2011 | 1253 | 2011 |
| Protein secondary structure assignment revisited: a detailed analysis of different assignment methods J Martin, G Letellier, A Marin, JF Taly, AG de Brevern, JF Gibrat BMC structural biology 5, 1-17, 2005 | 204 | 2005 |
| ABC likelihood-free methods for model choice in Gibbs random fields A Grelaud, JM Marin, CP Robert, F Rodolphe, JF Taly | 188 | 2009 |
| Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee JM Chang, P Di Tommaso, JF Taly, C Notredame BMC bioinformatics 13, 1-7, 2012 | 137 | 2012 |
| Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures JF Taly, C Magis, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Nature protocols 6 (11), 1669-1682, 2011 | 114 | 2011 |
| T-Coffee: Tree-based consistency objective function for alignment evaluation C Magis, JF Taly, G Bussotti, JM Chang, P Di Tommaso, I Erb, ... Multiple Sequence Alignment Methods, 117-129, 2014 | 78 | 2014 |
| Large-Scale Screening of a Targeted Enterococcus faecalis Mutant Library Identifies Envelope Fitness Factors L Rigottier-Gois, A Alberti, A Houel, JF Taly, P Palcy, J Manson, D Pinto, ... PloS one 6 (12), e29023, 2011 | 70 | 2011 |
| Pharmacological assessment defines Leishmania donovani casein kinase 1 as a drug target and reveals important functions in parasite viability and intracellular infection N Rachidi, JF Taly, E Durieu, O Leclercq, N Aulner, E Prina, P Pescher, ... Antimicrobial agents and chemotherapy 58 (3), 1501-1515, 2014 | 58 | 2014 |
| Cyclosporin A Treatment of Leishmania donovani Reveals Stage-Specific Functions of Cyclophilins in Parasite Proliferation and Viability WL Yau, T Blisnick, JF Taly, M Helmer-Citterich, C Schiene-Fischer, ... PLoS neglected tropical diseases 4 (6), e729, 2010 | 45 | 2010 |
| STRIKE: evaluation of protein MSAs using a single 3D structure C Kemena, JF Taly, J Kleinjung, C Notredame Bioinformatics 27 (24), 3385-3391, 2011 | 38 | 2011 |
| Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models? JF Taly, A Marin, JF Gibrat BMC bioinformatics 9, 1-24, 2008 | 21 | 2008 |
| SuperFly: a comparative database for quantified spatio-temporal gene expression patterns in early dipteran embryos D Cicin-Sain, AH Pulido, A Crombach, KR Wotton, E Jiménez-Guri, ... Nucleic Acids Research 43 (D1), D751-D755, 2015 | 19 | 2015 |
| Efficient and interpretable prediction of protein functional classes by correspondence analysis and compact set relations JM Chang, JF Taly, I Erb, TY Sung, WL Hsu, CY Tang, C Notredame, ... PloS one 8 (10), e75542, 2013 | 11 | 2013 |
| STRIKE: Evaluation of Protein Multiple Sequence Alignments us-ing a Single Three Dimensional Structure C Kemena, JF Taly, J Kleinjung, C Notredame Bioinformatics, 2011 | 1 | 2011 |
| Large-Scale Screening of a Targeted Enterococcus faecalis Mutant Library Identifies L Rigottier-Gois, A Alberti, A Houel, JF Taly, P Palcy | | 2011 |
| Large-Scale Screening of Enterococcus faecalis Mutant Library Identifies Envelope Fitness Factors L Rigottier-Gois, A Alberti, A Houel, JF Taly, P Palcy, J Manson, D Pinto, ... | | 2011 |
| Cyclosporin A treatment of Leishmania donovani reveals stage-specific functions of cyclophilins in parasite proliferation and viability. YWL Yau WaiLok, T Blisnick, JF Taly, M Helmer-Citterich, ... | | 2010 |
| Cyclosporin A Treatment of Leishmania donovani Reveals Stage-Specific WL Yau, T Blisnick, JF Taly, M Helmer-Citterich, C Schiene-Fischer | | 2010 |
| Choix de modèle pour les champs de Gibbs par un algorithme ABC. A Grelaud, CP Robert, JM Marin, F Rodolphe, JF Taly 41èmes Journées de Statistique, SFdS, Bordeaux, 2009 | | 2009 |
| ABC methods for model choice in Gibbs random fields Application to protein 3D structure prediction A Grelaud, CP Robert, JM Marin, F Rodolphe, JF Taly | | 2008 |
