Deepesh Nagarajan
Deepesh Nagarajan
Ramaiah University of Applied Sciences
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Computational antimicrobial peptide design and evaluation against multidrug-resistant clinical isolates of bacteria
D Nagarajan, T Nagarajan, N Roy, O Kulkarni, S Ravichandran, M Mishra, ...
Journal of Biological Chemistry 293 (10), 3492-3509, 2018
N4-cytosine DNA methylation regulates transcription and pathogenesis in Helicobacter pylori
S Kumar, BC Karmakar, D Nagarajan, AK Mukhopadhyay, RD Morgan, ...
Nucleic acids research 46 (7), 3429-3445, 2018
Ω76: A designed antimicrobial peptide to combat carbapenem- and tigecycline-resistant Acinetobacter baumannii
D Nagarajan, N Roy, O Kulkarni, N Nanajkar, A Datey, S Ravichandran, ...
Science Advances 5 (7), eaax1946, 2019
Computational design of mechanically coupled axle-rotor protein assemblies
A Courbet, J Hansen, Y Hsia, N Bethel, YJ Park, C Xu, A Moyer, ...
Science 376 (6591), 383-390, 2022
ABS–Scan: In silico alanine scanning mutagenesis for binding site residues in protein–ligand complex
P Anand, D Nagarajan, S Mukherjee, N Chandra
F1000Research 3, 2014
PLIC: protein–ligand interaction clusters
P Anand, D Nagarajan, S Mukherjee, N Chandra
Database 2014, bau029, 2014
Design of symmetric TIM barrel proteins from first principles
D Nagarajan, G Deka, M Rao
BMC biochemistry 16, 1-22, 2015
PocketMatch (version 2.0): A parallel algorithm for the detection of structural similarities between protein ligand binding-sites
D Nagarajan, N Chandra
2013 National Conference on Parallel Computing Technologies (PARCOMPTECH), 1-6, 2013
Design of a heme-binding peptide motif adopting a β-hairpin conformation
D Nagarajan, S Sukumaran, G Deka, K Krishnamurthy, HS Atreya, ...
Journal of Biological Chemistry 293 (24), 9412-9422, 2018
A uniform in vitro efficacy dataset to guide antimicrobial peptide design
D Nagarajan, T Nagarajan, N Nanajkar, N Chandra
Data 4 (1), 27, 2019
Blueprinting extendable nanomaterials with standardized protein blocks
TF Huddy, Y Hsia, RD Kibler, J Xu, N Bethel, D Nagarajan, R Redler, ...
Nature 627 (8005), 898-904, 2024
A complete morphological characterization of all life stages of the phorid fly Megaselia scalaris
J Pallavi, H Snehal, RS Kolipakala, D Salazar, M Hanbar, LB Chiramel, ...
Scientific Reports 13 (1), 22933, 2023
A new blood-based RNA signature (R9), for monitoring effectiveness of tuberculosis treatment in a South Indian longitudinal cohort
C Thakur, A Tripathi, S Ravichandran, A Shivananjaiah, A Chakraborty, ...
Iscience 25 (2), 2022
A simple method to determine the elimination half-life of drugs displaying noncumulative toxicity
D Nagarajan, P Venkatesh, C Thakur, A Datey, N Chandra, ...
bioRxiv, 761585, 2019
Assessment of Biofilm Formation among the Clinical Isolates of Escherichia coli in a Tertiary Care Hospital
B Biswas, NS Ashok, D Nagarajan, MZ Iqubal
Microbial Research Journal International 30 (1), 26-32, 2020
Fungal peptidomelanin: a novel biopolymer for the amelioration of soil heavy metal toxicity
RS Kolipakala, S Basu, S Sarkar, BM Biju, D Salazar, L Reddy, H Balaji, ...
Arktos: a simple tool for the design of polyhedral DNA nanostructures
H Balaji, AH Samprathi, RS Kolipakala, P Pradeep, D Nagarajan
bioRxiv, 2024.02. 07.576791, 2024
Improved prediction of stabilizing mutations in proteins by incorporation of mutational effects on ligand binding
S Ganesan, N Mittal, A Bhat, RS Adiga, A Ganesan, D Nagarajan, ...
bioRxiv, 2024.04. 11.589149, 2024
A Simple Radioassay to Detect Nanoscale Membrane Disruption
N Nanajkar, LS Mruthyunjaya, D Nagarajan
Methods and Protocols 6 (2), 23, 2023
Conserved Structural Motifs across Diverse Vitamin B12 Binding Proteins
P Pradeep, D Nagarajan
Journal of Bioinformatics and Systems Biology 6, 312-326, 2023
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