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James Tiedje
James Tiedje
Professor of Plant, Soil and Microbial Sciences and of Microbiology and Molecular Genetics, Michigan
Verified email at msu.edu
Title
Cited by
Cited by
Year
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Q Wang, GM Garrity, JM Tiedje, JR Cole
Applied and environmental microbiology 73 (16), 5261-5267, 2007
159892007
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
JR Cole, Q Wang, E Cardenas, J Fish, B Chai, RJ Farris, ...
Nucleic acids research 37 (suppl_1), D141-D145, 2009
51432009
DNA recovery from soils of diverse composition
J Zhou, MA Bruns, JM Tiedje
Applied and environmental microbiology 62 (2), 316-322, 1996
37501996
Ribosomal Database Project: data and tools for high throughput rRNA analysis
JR Cole, Q Wang, JA Fish, B Chai, DM McGarrell, Y Sun, CT Brown, ...
Nucleic acids research 42 (D1), D633-D642, 2014
34932014
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
J Goris, KT Konstantinidis, JA Klappenbach, T Coenye, P Vandamme, ...
International journal of systematic and evolutionary microbiology 57 (1), 81-91, 2007
34252007
The RDP (ribosomal database project) continues
BL Maidak, JR Cole, TG Lilburn, CT Parker Jr, PR Saxman, JM Stredwick, ...
Nucleic acids research 28 (1), 173-174, 2000
21402000
Ecology of denitrification and dissimilatory nitrate reduction to ammonium
JM Tiedje
Biology of anaerobic microorganisms, 179-244, 1988
20711988
Diverse and abundant antibiotic resistance genes in Chinese swine farms
YG Zhu, TA Johnson, JQ Su, M Qiao, GX Guo, RD Stedtfeld, ...
Proceedings of the National Academy of Sciences 110 (9), 3435-3440, 2013
18722013
Genomic insights that advance the species definition for prokaryotes
KT Konstantinidis, JM Tiedje
Proceedings of the National Academy of Sciences 102 (7), 2567-2572, 2005
18142005
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
JR Cole, B Chai, RJ Farris, Q Wang, SA Kulam, DM McGarrell, GM Garrity, ...
Nucleic acids research 33 (suppl_1), D294-D296, 2005
17062005
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
JR Cole, B Chai, TL Marsh, RJ Farris, Q Wang, SA Kulam, S Chandra, ...
Nucleic acids research 31 (1), 442-443, 2003
16552003
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
JR Cole, B Chai, RJ Farris, Q Wang, AS Kulam-Syed-Mohideen, ...
Nucleic acids research 35 (suppl_1), D169-D172, 2007
12772007
Denitrification
JM Tiedje
Methods of Soil Analysis: Part 2 Chemical and Microbiological Properties 9 …, 1983
1087*1983
Microbial reductive dehalogenation
WW Mohn, JM Tiedje
Microbiological reviews 56 (3), 482-507, 1992
10151992
A new version of the RDP (Ribosomal Database Project)
BL Maidak, JR Cole, CT Parker Jr, GM Garrity, N Larsen, B Li, TG Lilburn, ...
Nucleic acids research 27 (1), 171-173, 1999
10071999
Towards environmental systems biology of Shewanella
JK Fredrickson, MF Romine, AS Beliaev, JM Auchtung, ME Driscoll, ...
Nature Reviews Microbiology 6 (8), 592-603, 2008
9172008
In-feed antibiotic effects on the swine intestinal microbiome
T Looft, TA Johnson, HK Allen, DO Bayles, DP Alt, RD Stedtfeld, WJ Sul, ...
Proceedings of the National Academy of Sciences 109 (5), 1691-1696, 2012
8992012
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis, JM Tiedje
Journal of bacteriology 187 (18), 6258-6264, 2005
8472005
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution
MR Gillings, WH Gaze, A Pruden, K Smalla, JM Tiedje, YG Zhu
The ISME journal 9 (6), 1269-1279, 2015
8242015
The planned introduction of genetically engineered organisms: ecological considerations and recommendations
JM Tiedje, RK Colwell, YL Grossman, RE Hodson, RE Lenski, RN Mack, ...
Ecology 70 (2), 298-315, 1989
8141989
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