| Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS S Páll, A Zhmurov, P Bauer, M Abraham, M Lundborg, A Gray, B Hess, ... The Journal of Chemical Physics 153 (13), 2020 | 523 | 2020 |
| Mechanism of fibrin (ogen) forced unfolding A Zhmurov, AEX Brown, RI Litvinov, RI Dima, JW Weisel, V Barsegov Structure 19 (11), 1615-1624, 2011 | 159 | 2011 |
| Mechanical transition from α-helical coiled coils to β-sheets in fibrin (ogen) A Zhmurov, O Kononova, RI Litvinov, RI Dima, V Barsegov, JW Weisel Journal of the American Chemical Society 134 (50), 20396-20402, 2012 | 127 | 2012 |
| Sop‐GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors A Zhmurov, RI Dima, Y Kholodov, V Barsegov Proteins: Structure, Function, and Bioinformatics 78 (14), 2984-2999, 2010 | 87 | 2010 |
| GROMACS 2023.1 Manual M Abraham, A Alekseenko, C Bergh, C Blau, E Briand, M Doijade, ... GROMACS: Groningen, The Netherlands, 2023 | 61 | 2023 |
| Mechanical properties of tubulin intra-and inter-dimer interfaces and their implications for microtubule dynamic instability VA Fedorov, PS Orekhov, EG Kholina, AA Zhmurov, FI Ataullakhanov, ... PLoS computational biology 15 (8), e1007327, 2019 | 52 | 2019 |
| Structural basis of interfacial flexibility in fibrin oligomers A Zhmurov, AD Protopopova, RI Litvinov, P Zhukov, AR Mukhitov, ... Structure 24 (11), 1907-1917, 2016 | 48 | 2016 |
| Atomic structural models of fibrin oligomers A Zhmurov, AD Protopopova, RI Litvinov, P Zhukov, JW Weisel, ... Structure 26 (6), 857-868. e4, 2018 | 47 | 2018 |
| Generation of Random Numbers on Graphics Processors: Forced Indentation In Silico of the Bacteriophage HK97 A Zhmurov, K Rybnikov, Y Kholodov, V Barsegov The Journal of Physical Chemistry B 115 (18), 5278-5288, 2011 | 47 | 2011 |
| Molecular mechanisms, thermodynamics, and dissociation kinetics of knob-hole interactions in fibrin O Kononova, RI Litvinov, A Zhmurov, A Alekseenko, CH Cheng, ... Journal of Biological Chemistry 288 (31), 22681-22692, 2013 | 40 | 2013 |
| Sharing data from molecular simulations M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ... Journal of chemical information and modeling 59 (10), 4093-4099, 2019 | 39 | 2019 |
| Conformational flexibility and self-association of fibrinogen in concentrated solutions YF Zuev, RI Litvinov, AE Sitnitsky, BZ Idiyatullin, DR Bakirova, ... The Journal of Physical Chemistry B 121 (33), 7833-7843, 2017 | 39 | 2017 |
| Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds RI Litvinov, O Kononova, A Zhmurov, KA Marx, V Barsegov, D Thirumalai, ... Proceedings of the National Academy of Sciences 115 (34), 8575-8580, 2018 | 33 | 2018 |
| Multiscale modeling of the nanomechanics of microtubule protofilaments KE Theisen, A Zhmurov, ME Newberry, V Barsegov, RI Dima The Journal of Physical Chemistry B 116 (29), 8545-8555, 2012 | 29 | 2012 |
| Nonparametric density estimation and optimal bandwidth selection for protein unfolding and unbinding data E Bura, A Zhmurov, V Barsegov The Journal of chemical physics 130 (1), 2009 | 28 | 2009 |
| Molecular packing structure of fibrin fibers resolved by X-ray scattering and molecular modeling KA Jansen, A Zhmurov, BE Vos, G Portale, D Hermida-Merino, RI Litvinov, ... Soft Matter 16 (35), 8272-8283, 2020 | 27 | 2020 |
| Dynamic transition from α-helices to β-sheets in polypeptide coiled-coil motifs KA Minin, A Zhmurov, KA Marx, PK Purohit, V Barsegov Journal of the American Chemical Society 139 (45), 16168-16177, 2017 | 24 | 2017 |
| Exploring the mechanical stability of the C2 domains in human synaptotagmin 1 L Duan, A Zhmurov, V Barsegov, RI Dima The Journal of Physical Chemistry B 115 (33), 10133-10146, 2011 | 24 | 2011 |
| Order statistics theory of unfolding of multimeric proteins A Zhmurov, RI Dima, V Barsegov Biophysical journal 99 (6), 1959-1968, 2010 | 22 | 2010 |
| Botulinum neurotoxin: unique folding of enzyme domain of the most-poisonous poison R Kumar, RV Kukreja, L Li, A Zhmurov, O Kononova, S Cai, SA Ahmed, ... Journal of Biomolecular Structure and Dynamics 32 (5), 804-815, 2014 | 16 | 2014 |
Valeri BarsegovUniversity of Massachusetts LowellVerified email at uml.edu
