Artem Zhmurov
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Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS
S Páll, A Zhmurov, P Bauer, M Abraham, M Lundborg, A Gray, B Hess, ...
The Journal of Chemical Physics 153 (13), 2020
Mechanism of fibrin (ogen) forced unfolding
A Zhmurov, AEX Brown, RI Litvinov, RI Dima, JW Weisel, V Barsegov
Structure 19 (11), 1615-1624, 2011
Mechanical transition from α-helical coiled coils to β-sheets in fibrin (ogen)
A Zhmurov, O Kononova, RI Litvinov, RI Dima, V Barsegov, JW Weisel
Journal of the American Chemical Society 134 (50), 20396-20402, 2012
Sop‐GPU: Accelerating biomolecular simulations in the centisecond timescale using graphics processors
A Zhmurov, RI Dima, Y Kholodov, V Barsegov
Proteins: Structure, Function, and Bioinformatics 78 (14), 2984-2999, 2010
Structural basis of interfacial flexibility in fibrin oligomers
A Zhmurov, AD Protopopova, RI Litvinov, P Zhukov, AR Mukhitov, ...
Structure 24 (11), 1907-1917, 2016
Mechanical properties of tubulin intra-and inter-dimer interfaces and their implications for microtubule dynamic instability
VA Fedorov, PS Orekhov, EG Kholina, AA Zhmurov, FI Ataullakhanov, ...
PLoS computational biology 15 (8), e1007327, 2019
Generation of Random Numbers on Graphics Processors: Forced Indentation In Silico of the Bacteriophage HK97
A Zhmurov, K Rybnikov, Y Kholodov, V Barsegov
The Journal of Physical Chemistry B 115 (18), 5278-5288, 2011
Atomic structural models of fibrin oligomers
A Zhmurov, AD Protopopova, RI Litvinov, P Zhukov, JW Weisel, ...
Structure 26 (6), 857-868. e4, 2018
Molecular mechanisms, thermodynamics, and dissociation kinetics of knob-hole interactions in fibrin
O Kononova, RI Litvinov, A Zhmurov, A Alekseenko, CH Cheng, ...
Journal of Biological Chemistry 288 (31), 22681-22692, 2013
Conformational flexibility and self-association of fibrinogen in concentrated solutions
YF Zuev, RI Litvinov, AE Sitnitsky, BZ Idiyatullin, DR Bakirova, ...
The Journal of Physical Chemistry B 121 (33), 7833-7843, 2017
Sharing data from molecular simulations
M Abraham, R Apostolov, J Barnoud, P Bauer, C Blau, AMJJ Bonvin, ...
Journal of chemical information and modeling 59 (10), 4093-4099, 2019
GROMACS 2023.1 Manual
M Abraham, A Alekseenko, C Bergh, C Blau, E Briand, M Doijade, ...
GROMACS: Groningen, The Netherlands, 2023
Regulatory element in fibrin triggers tension-activated transition from catch to slip bonds
RI Litvinov, O Kononova, A Zhmurov, KA Marx, V Barsegov, D Thirumalai, ...
Proceedings of the National Academy of Sciences 115 (34), 8575-8580, 2018
Multiscale modeling of the nanomechanics of microtubule protofilaments
KE Theisen, A Zhmurov, ME Newberry, V Barsegov, RI Dima
The Journal of Physical Chemistry B 116 (29), 8545-8555, 2012
Nonparametric density estimation and optimal bandwidth selection for protein unfolding and unbinding data
E Bura, A Zhmurov, V Barsegov
The Journal of chemical physics 130 (1), 2009
Molecular packing structure of fibrin fibers resolved by X-ray scattering and molecular modeling
KA Jansen, A Zhmurov, BE Vos, G Portale, D Hermida-Merino, RI Litvinov, ...
Soft Matter 16 (35), 8272-8283, 2020
Exploring the mechanical stability of the C2 domains in human synaptotagmin 1
L Duan, A Zhmurov, V Barsegov, RI Dima
The Journal of Physical Chemistry B 115 (33), 10133-10146, 2011
Dynamic transition from α-helices to β-sheets in polypeptide coiled-coil motifs
KA Minin, A Zhmurov, KA Marx, PK Purohit, V Barsegov
Journal of the American Chemical Society 139 (45), 16168-16177, 2017
Order statistics theory of unfolding of multimeric proteins
A Zhmurov, RI Dima, V Barsegov
Biophysical journal 99 (6), 1959-1968, 2010
Botulinum neurotoxin: unique folding of enzyme domain of the most-poisonous poison
R Kumar, RV Kukreja, L Li, A Zhmurov, O Kononova, S Cai, SA Ahmed, ...
Journal of Biomolecular Structure and Dynamics 32 (5), 804-815, 2014
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Articles 1–20