Spidey: a tool for mRNA-to-genomic alignments SJ Wheelan, DM Church, JM Ostell Genome research 11 (11), 1952-1957, 2001 | 407 | 2001 |
Nuclear miRNA regulates the mitochondrial genome in the heart S Das, M Ferlito, OA Kent, K Fox-Talbot, R Wang, D Liu, N Raghavachari, ... Circulation research 110 (12), 1596-1603, 2012 | 398 | 2012 |
Transcriptional programs of neoantigen-specific TIL in anti-PD-1-treated lung cancers JX Caushi, J Zhang, Z Ji, A Vaghasia, B Zhang, EHC Hsiue, BJ Mog, ... Nature 596 (7870), 126-132, 2021 | 389 | 2021 |
Gibbon genome and the fast karyotype evolution of small apes L Carbone, R Alan Harris, S Gnerre, KR Veeramah, B Lorente-Galdos, ... Nature 513 (7517), 195-201, 2014 | 386 | 2014 |
Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins JC Harr, TR Luperchio, X Wong, E Cohen, SJ Wheelan, KL Reddy Journal of Cell Biology 208 (1), 33-52, 2015 | 351 | 2015 |
Extensive somatic L1 retrotransposition in colorectal tumors S Solyom, AD Ewing, EP Rahrmann, T Doucet, HH Nelson, MB Burns, ... Genome research 22 (12), 2328-2338, 2012 | 310 | 2012 |
Mobile interspersed repeats are major structural variants in the human genome CRL Huang, AM Schneider, Y Lu, T Niranjan, P Shen, MA Robinson, ... Cell 141 (7), 1171-1182, 2010 | 302 | 2010 |
piggyBac transposase tools for genome engineering X Li, ER Burnight, AL Cooney, N Malani, T Brady, JD Sander, J Staber, ... Proceedings of the National Academy of Sciences 110 (25), E2279-E2287, 2013 | 270 | 2013 |
Domain size distributions can predict domain boundaries SJ Wheelan, A Marchler-Bauer, SH Bryant Bioinformatics 16 (7), 613-618, 2000 | 237 | 2000 |
Genome-wide consequences of deleting any single gene X Teng, M Dayhoff-Brannigan, WC Cheng, CE Gilbert, CN Sing, NL Diny, ... Molecular cell 52 (4), 485-494, 2013 | 228 | 2013 |
Cellular resolution maps of X chromosome inactivation: implications for neural development, function, and disease H Wu, J Luo, H Yu, A Rattner, A Mo, Y Wang, PM Smallwood, B Erlanger, ... Neuron 81 (1), 103-119, 2014 | 225 | 2014 |
GeneDesign: rapid, automated design of multikilobase synthetic genes SM Richardson, SJ Wheelan, RM Yarrington, JD Boeke Genome research 16 (4), 550-556, 2006 | 224 | 2006 |
Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS computational biology 8 (5), e1002529, 2012 | 199 | 2012 |
Transcriptome-Wide Binding Sites for Components of the Saccharomyces cerevisiae Non-Poly(A) Termination Pathway: Nrd1, Nab3, and Sen1 TJ Creamer, MM Darby, N Jamonnak, P Schaughency, H Hao, ... PLoS genetics 7 (10), e1002329, 2011 | 196 | 2011 |
Clinical Validation of KRAS, BRAF, and EGFR Mutation Detection Using Next-Generation Sequencing MT Lin, SL Mosier, M Thiess, KF Beierl, M Debeljak, LH Tseng, G Chen, ... American journal of clinical pathology 141 (6), 856-866, 2014 | 167 | 2014 |
Sequence and comparative analysis of the mouse 1-megabase region orthologous to the human 11p15 imprinted domain P Onyango, W Miller, J Lehoczky, CT Leung, B Birren, S Wheelan, ... Genome Research 10 (11), 1697-1710, 2000 | 153 | 2000 |
Gene-breaking: a new paradigm for human retrotransposon-mediated gene evolution SJ Wheelan, Y Aizawa, JS Han, JD Boeke Genome research 15 (8), 1073-1078, 2005 | 142 | 2005 |
Active retrotransposition by a synthetic L1 element in mice W An, JS Han, SJ Wheelan, ES Davis, CE Coombes, P Ye, C Triplett, ... Proceedings of the National Academy of Sciences 103 (49), 18662-18667, 2006 | 134 | 2006 |
Sequence variations in the public human genome data reflect a bottlenecked population history G Marth, G Schuler, R Yeh, R Davenport, R Agarwala, D Church, ... Proceedings of the National Academy of Sciences 100 (1), 376-381, 2003 | 129 | 2003 |
ATM kinase is required for telomere elongation in mouse and human cells SS Lee, C Bohrson, AM Pike, SJ Wheelan, CW Greider Cell reports 13 (8), 1623-1632, 2015 | 126 | 2015 |