Lee S. Katz
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
A Moura, A Criscuolo, H Pouseele, MM Maury, A Leclercq, C Tarr, ...
Nature microbiology 2 (2), 16185, 2017
Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Reviews of Infectious Diseases 63 (3), 380-386, 2016
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
A Petkau, P Mabon, C Sieffert, NC Knox, J Cabral, M Iskander, M Iskander, ...
Microbial genomics 3 (6), e000116, 2017
Mashtree: a rapid comparison of whole genome sequence files
LS Katz, T Griswold, SS Morrison, JA Caravas, S Zhang, HC Den Bakker, ...
Journal of Open Source Software 4 (44), 2019
Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti
LS Katz, A Petkau, J Beaulaurier, S Tyler, ES Antonova, MA Turnsek, ...
MBio 4 (4), 2013
Novel epidemic clones of Listeria monocytogenes, United States, 2011
S Lomonaco, B Verghese, P Gerner-Smidt, C Tarr, L Gladney, L Joseph, ...
Emerging infectious diseases 19 (1), 147-150, 2013
Laboratory methods for the diagnosis of meningitis caused by neisseria meningitidis, streptococcus pneumoniae, and haemophilus influenza; WHO manual
D Castillo, B Harcourt, C Hatcher, M Jackson, L Katz, R Mair, L Mayer, ...
Comparative analysis reveals signatures of differentiation amid genomic polymorphism in Lake Malawi cichlids
YHE Loh, LS Katz, MC Mims, TD Kocher, SV Yi, JT Streelman
Genome biology 9 (7), 1-12, 2008
A comparative analysis of the Lyve-SET phylogenomics pipeline for genomic epidemiology of foodborne pathogens
LS Katz, T Griswold, AJ Williams-Newkirk, D Wagner, A Petkau, C Sieffert, ...
Frontiers in microbiology 8, 375, 2017
Notes from the Field: Listeriosis Associated with Stone Fruit—United States, 2014
BR Jackson, M Salter, C Tarr, A Conrad, E Harvey, L Steinbock, A Saupe, ...
MMWR, 2015
Haemophilus haemolyticus Isolates Causing Clinical Disease
R Anderson, X Wang, EC Briere, LS Katz, AC Cohn, TA Clark, ...
Journal of Clinical Microbiology 50 (7), 2462-2465, 2012
Whole genome and core genome multilocus sequence typing and single nucleotide polymorphism analyses of Listeria monocytogenes isolates associated with an outbreak linked to …
Y Chen, Y Luo, H Carleton, R Timme, D Melka, T Muruvanda, C Wang, ...
Applied and environmental microbiology 83 (15), e00633-17, 2017
A computational genomics pipeline for prokaryotic sequencing projects
AO Kislyuk, LS Katz, S Agrawal, MS Hagen, AB Conley, P Jayaraman, ...
Bioinformatics 26 (15), 1819-1826, 2010
Genome sequences for six Rhodanobacter strains, isolated from soils and the terrestrial subsurface, with variable denitrification capabilities
JE Kostka, SJ Green, L Rishishwar, O Prakash, LS Katz, ...
Journal of Bacteriology 194 (16), 4461-4462, 2012
Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance
RE Timme, H Rand, M Shumway, EK Trees, M Simmons, R Agarwala, ...
PeerJ 5, e3893, 2017
Comparison of classical multi-locus sequence typing software for next-generation sequencing data
AJ Page, NF Alikhan, HA Carleton, T Seemann, JA Keane, LS Katz
Microbial Genomics, 2017
Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus
MJ Theodore, RD Anderson, X Wang, LS Katz, JT Vuong, ME Bell, ...
Journal of clinical microbiology 50 (4), 1422-1424, 2012
Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection
T Azarian, A Ali, JA Johnson, D Mohr, M Prosperi, NM Veras, M Jubair, ...
MBio 5 (6), 2014
Determination of evolutionary relationships of outbreak-associated Listeria monocytogenes strains of serotypes 1/2a and 1/2b by whole-genome sequencing
TM Bergholz, HC den Bakker, LS Katz, BJ Silk, KA Jackson, Z Kucerova, ...
Applied and environmental microbiology 82 (3), 928, 2016
Use of Whole Genome Sequencing by the Federal Interagency Collaboration for Genomics for Food and Feed Safety in the United States
EL Stevens, HA Carleton, J Beal, GE Tillman, RL Lindsey, AC Lauer, ...
Journal of Food Protection 85 (5), 755-772, 2022
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