Shihua Zhang
Shihua Zhang
Professor of Academy of Mathematics and Systems Science, Chinese Academy of Sciences
Verified email at - Homepage
Cited by
Cited by
A community effort to assess and improve drug sensitivity prediction algorithms
WK Costello JC, Heiser LM, Georgii E, Gönen M, Menden MP, Wang NJ, Bansal M ...
Nature Biotechnology, 32(12):1202-1212., 2014
Identification of overlapping community structure in complex networks using fuzzy c-means clustering
S Zhang*, RS Wang, XS Zhang
Physica A: Statistical Mechanics and its Applications 374 (1), 483-490, 2007
Quantitative function for community detection
Z Li^, S Zhang^, RS Wang, XS Zhang, L Chen
Physical Review E 77, 036109, 2008
Discovery of multi-dimensional modules by integrative analysis of cancer genomic data
S Zhang, CC Liu, W Li, H Shen, PW Laird, XJ Zhou
Nucleic Acids Research (2012), 40:9379-9391., 2012
A community computational challenge to predict the activity of pairs of compounds
M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ...
Nature Biotechnology, 32(12):1213-1222., 2014
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
S Zhang*, Q Li, J Liu, XJ Zhou*
Bioinformatics 27 (13), i401-i409, 2011
Deciphering spatial domains from spatially resolved transcriptomics with an adaptive graph attention auto-encoder
K Dong, S Zhang*
Nature Communications (2022), 13:1739., 2022
Inferring causal molecular networks: empirical assessment through a community-based effort
SM Hill, ..., Z Liu, W Min, S Zhang, ..., et al.
Nature Methods (2016), 13(4):310-318., 2016
Uncovering fuzzy community structure in complex networks
S Zhang, RS Wang, XS Zhang
Physical Review E 76 (4), 046103, 2007
Efficient methods for identifying mutated driver pathways in cancer
J Zhao, S Zhang*, LY Wu, XS Zhang
Bioinformatics (2012), 28:2940-2947., 2012
Prediction of overall survival for patients with metastatic castration-resistant prostate cancer: development of a prognostic model through a crowdsourced challenge with open …
J Guinney, T Wang, TD Laajala, KK Winner, JC Bare, EC Neto, SA Khan, ...
The Lancet Oncology, (2016), doi: 10.1016/S1470-2045(16)30560-5., 2016
Comparative pan-cancer DNA methylation analysis reveals cancer common and specific patterns
X Yang, L Gao*, S Zhang*
Briefings in Bioinformatics (2017), 18(5), 761–773. doi:10.1093/bib/bbw063., 2017
Identifying multi-layer gene regulatory modules from multi-dimensional genomic data
W Li^, S Zhang^, CC Liu, XJ Zhou
Bioinformatics (2012), 28:2458-2466., 2012
Comparison of computational methods for imputing single-cell RNA-sequencing data
L Zhang, S Zhang*
IEEE/ACM Transactions on Computational Biology and Bioinformatics (2020), 17 …, 2020
Alignment of molecular networks by integer quadratic programming
Z Li^, S Zhang^, Y Wang, XS Zhang, L Chen
Bioinformatics 23 (13), 1631-1639, 2007
Discovering functions and revealing mechanisms at molecular level from biological networks
S Zhang, G Jin, XS Zhang, L Chen
Proteomics 7 (16), 2856-2869, 2007
DrugE-Rank: improving drug-target interaction prediction of new candidate drugs or targets by ensemble learning to rank
Q Yuan, J Gao, D Wu, S Zhang, H Mamitsuka, S Zhu
Bioinformatics (ISMB2016), 32(12): i18-i27., 2016
Breast tumor subgroups reveal diverse clinical prognostic power
Z Liu, XS Zhang, S Zhang*
Scientific Reports 4, 4002., 2014
Prediction of human population responses to toxic compounds by a collaborative competition.
F Eduati, LM Mangravite, T Wang, H Tang, ......, S Zhang, J Zhao, ......, ...
Nature Biotechnology, 33(9):933-940., 2015
Discovery of co-occurring driver pathways in cancer
J Zhang*, LY Wu, XS Zhang, S Zhang*
BMC Bioinformatics 15 (1), 271, 2014
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