| Simultaneous Emergence of Multidrug-Resistant Candida auris on 3 Continents Confirmed by Whole-Genome Sequencing and Epidemiological Analyses SR Lockhart, KA Etienne, S Vallabhaneni, J Farooqi, A Chowdhary, ... Clinical Infectious Diseases 64 (2), 134-140, 2017 | 1473 | 2017 |
| Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species JH Werren, S Richards, CA Desjardins, O Niehuis, J Gadau, ... Science 327 (5963), 343-348, 2010 | 933 | 2010 |
| Comparative functional genomics of the fission yeasts N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ... Science 332 (6032), 930-936, 2011 | 538 | 2011 |
| Comparative genomics of enterococci: variation in Enterococcus faecalis, clade structure in E. faecium, and defining characteristics of E. gallinarum and E. casseliflavus KL Palmer, P Godfrey, A Griggs, VN Kos, J Zucker, C Desjardins, ... MBio 3 (1), 10.1128/mbio. 00318-11, 2012 | 310 | 2012 |
| Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates … KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ... PLoS medicine 12 (9), e1001880, 2015 | 303 | 2015 |
| Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395-402, 2017 | 296 | 2017 |
| Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth CA Cuomo, CA Desjardins, MA Bakowski, J Goldberg, AT Ma, JJ Becnel, ... Genome research 22 (12), 2478-2488, 2012 | 295 | 2012 |
| Insights into the venom composition of the ectoparasitoid wasp Nasonia vitripennis from bioinformatic and proteomic studies DC De Graaf, M Aerts, M Brunain, CA Desjardins, FJ Jacobs, JH Werren, ... Insect molecular biology 19, 11-26, 2010 | 225 | 2010 |
| Genomics of Loa loa, a Wolbachia-free filarial parasite of humans CA Desjardins, GC Cerqueira, JM Goldberg, JCD Hotopp, BJ Haas, ... Nature genetics 45 (5), 495-500, 2013 | 208 | 2013 |
| Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis CA Desjardins, MD Champion, JW Holder, A Muszewska, J Goldberg, ... PLoS genetics 7 (10), e1002345, 2011 | 203 | 2011 |
| Ubiquitin-Mediated Response to Microsporidia and Virus Infection in C. elegans MA Bakowski, CA Desjardins, MG Smelkinson, TA Dunbar, ... PLoS pathogens 10 (6), e1004200, 2014 | 192 | 2014 |
| Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ... Nature genetics 48 (5), 544-551, 2016 | 191 | 2016 |
| Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus … VN Kos, CA Desjardins, A Griggs, G Cerqueira, A Van Tonder, ... MBio 3 (3), 10.1128/mbio. 00112-12, 2012 | 168 | 2012 |
| Population genomics and the evolution of virulence in the fungal pathogen Cryptococcus neoformans CA Desjardins, C Giamberardino, SM Sykes, CH Yu, JL Tenor, Y Chen, ... Genome research 27 (7), 1207-1219, 2017 | 154 | 2017 |
| Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development JW Holder, JC Ulrich, AC DeBono, PA Godfrey, CA Desjardins, J Zucker, ... PLoS Genetics 7 (9), e1002219, 2011 | 152 | 2011 |
| The mushroom habitat as an ecological arena for global exchange of Wolbachia JK Stahlhut, CA Desjardins, ME Clark, L Baldo, JA Russell, JH Werren, ... Molecular ecology 19 (9), 1940-1952, 2010 | 139 | 2010 |
| Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges KA Cohen, AL Manson, CA Desjardins, T Abeel, AM Earl Genome medicine 11 (1), 45, 2019 | 133 | 2019 |
| SER-109, an Investigational Microbiome Drug to Reduce Recurrence After Clostridioides difficile Infection: Lessons Learned From a Phase 2 Trial BH McGovern, CB Ford, MR Henn, DS Pardi, S Khanna, EL Hohmann, ... Clinical Infectious Diseases 72 (12), 2132-2140, 2021 | 129 | 2021 |
| Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators B Hommel, L Mukaremera, RJB Cordero, C Coelho, CA Desjardins, ... PLoS pathogens 14 (5), e1006982, 2018 | 129* | 2018 |
| Contrasting host–pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes CA Desjardins, ND Sanscrainte, JM Goldberg, D Heiman, S Young, ... Nature communications 6 (1), 7121, 2015 | 118 | 2015 |
