| The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019 | 6515 | 2019 |
| BioContainers: an open-source and community-driven framework for software standardization F da Veiga Leprevost, BA Grüning, S Alves Aflitos, HL Röst, J Uszkoreit, ... Bioinformatics 33 (16), 2580-2582, 2017 | 541 | 2017 |
| Ten simple rules for taking advantage of Git and GitHub Y Perez-Riverol, L Gatto, R Wang, T Sachsenberg, J Uszkoreit, ... PLoS computational biology 12 (7), e1004947, 2016 | 178 | 2016 |
| PRIDE inspector toolsuite: moving toward a universal visualization tool for proteomics data standard formats and quality assessment of ProteomeXchange datasets Y Perez-Riverol, QW Xu, R Wang, J Uszkoreit, J Griss, A Sanchez, ... Molecular & Cellular Proteomics 15 (1), 305-317, 2016 | 174 | 2016 |
| Reproducibility, specificity and accuracy of relative quantification using spectral library-based data-independent acquisition K Barkovits, S Pacharra, K Pfeiffer, S Steinbach, M Eisenacher, K Marcus, ... Molecular & Cellular Proteomics 19 (1), 181-197, 2020 | 141 | 2020 |
| A combined laser microdissection and mass spectrometry approach reveals new disease relevant proteins accumulating in aggregates of filaminopathy patients RA Kley, A Maerkens, Y Leber, V Theis, A Schreiner, PFM van der Ven, ... Molecular & cellular proteomics 12 (1), 215-227, 2013 | 95 | 2013 |
| Proteomics of rimmed vacuoles define new risk allele in inclusion body myositis AK Güttsches, S Brady, K Krause, A Maerkens, J Uszkoreit, M Eisenacher, ... Annals of neurology 81 (2), 227-239, 2017 | 91 | 2017 |
| Differential proteomic analysis of abnormal intramyoplasmic aggregates in desminopathy A Maerkens, RA Kley, M Olivé, V Theis, PFM Van Der Ven, J Reimann, ... Journal of proteomics 90, 14-27, 2013 | 79 | 2013 |
| PIA: an intuitive protein inference engine with a web-based user interface J Uszkoreit, A Maerkens, Y Perez-Riverol, HE Meyer, K Marcus, ... Journal of proteome research 14 (7), 2988-2997, 2015 | 76 | 2015 |
| The mzquantml data standard for mass spectrometry–based quantitative studies in proteomics M Walzer, D Qi, G Mayer, J Uszkoreit, M Eisenacher, T Sachsenberg, ... Molecular & cellular proteomics 12 (8), 2332-2340, 2013 | 74 | 2013 |
| A proteomics sample metadata representation for multiomics integration and big data analysis C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ... Nature Communications 12 (1), 5854, 2021 | 70 | 2021 |
| The mzIdentML data standard version 1.2, supporting advances in proteome informatics JA Vizcaíno, G Mayer, S Perkins, H Barsnes, M Vaudel, Y Perez-Riverol, ... Molecular & cellular proteomics 16 (7), 1275-1285, 2017 | 66 | 2017 |
| In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics E Audain, J Uszkoreit, T Sachsenberg, J Pfeuffer, X Liang, H Hermjakob, ... Journal of proteomics 150, 170-182, 2017 | 65 | 2017 |
| New insights into the protein aggregation pathology in myotilinopathy by combined proteomic and immunolocalization analyses A Maerkens, M Olivé, A Schreiner, S Feldkirchner, J Schessl, J Uszkoreit, ... Acta neuropathologica communications 4, 1-20, 2016 | 62 | 2016 |
| Sense and nonsense of pathway analysis software in proteomics T Müller, A Schrötter, C Loosse, S Helling, C Stephan, M Ahrens, ... Journal of proteome research 10 (12), 5398-5408, 2011 | 57 | 2011 |
| Amyloid beta a4 precursor protein-binding family B member 1 (FE65) interactomics revealed synaptic vesicle glycoprotein 2A (SV2A) and sarcoplasmic/endoplasmic reticulum calcium … FM Nensa, MHD Neumann, A Schrötter, A Przyborski, T Mastalski, ... Molecular & Cellular Proteomics 13 (2), 475-488, 2014 | 44 | 2014 |
| Characterization of cerebrospinal fluid via data-independent acquisition mass spectrometry K Barkovits, A Linden, S Galozzi, L Schilde, S Pacharra, B Mollenhauer, ... Journal of proteome research 17 (10), 3418-3430, 2018 | 37 | 2018 |
| Toward an integrated machine learning model of a proteomics experiment BA Neely, V Dorfer, L Martens, I Bludau, R Bouwmeester, S Degroeve, ... Journal of proteome research 22 (3), 681-696, 2023 | 35 | 2023 |
| Protein inference using PIA workflows and PSI standard file formats J Uszkoreit, Y Perez-Riverol, B Eggers, K Marcus, M Eisenacher Journal of proteome research 18 (2), 741-747, 2018 | 33 | 2018 |
| FE65 regulates and interacts with the Bloom syndrome protein in dynamic nuclear spheres–potential relevance to Alzheimer’s disease A Schrötter, T Mastalski, FM Nensa, M Neumann, C Loosse, K Pfeiffer, ... Journal of cell science 126 (11), 2480-2492, 2013 | 32 | 2013 |
Martin EisenacherMedizinische Bioinformatik, Medizinisches Proteom-Center, Ruhr-University BochumVerified email at rub.de
