Alice R. Wattam
Alice R. Wattam
Verified email at virginia.edu
Title
Cited by
Cited by
Year
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
R Overbeek, R Olson, GD Pusch, GJ Olsen, JJ Davis, T Disz, RA Edwards, ...
Nucleic acids research 42 (D1), D206-D214, 2014
30882014
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
12132015
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
12132015
PATRIC, the bacterial bioinformatics database and analysis resource
AR Wattam, D Abraham, O Dalay, TL Disz, T Driscoll, JL Gabbard, ...
Nucleic acids research 42 (D1), D581-D591, 2014
10262014
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
9582017
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
JJ Gillespie, AR Wattam, SA Cammer, JL Gabbard, MP Shukla, O Dalay, ...
Infection and immunity 79 (11), 4286-4298, 2011
2702011
Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life
JJ Gillespie, K Williams, M Shukla, EE Snyder, EK Nordberg, SM Ceraul, ...
PloS one 3 (4), e2018, 2008
1832008
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
1572020
Antimicrobial resistance prediction in PATRIC and RAST
JJ Davis, S Boisvert, T Brettin, RW Kenyon, C Mao, R Olson, R Overbeek, ...
Scientific reports 6 (1), 1-12, 2016
1422016
Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle
AR Wattam, KP Williams, EE Snyder, NF Almeida Jr, M Shukla, ...
Journal of bacteriology 191 (11), 3569-3579, 2009
1362009
Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence
AR Wattam, JT Foster, SP Mane, SM Beckstrom-Sternberg, ...
Journal of bacteriology 196 (5), 920-930, 2014
942014
Comparative phylogenomics and evolution of the Brucellae reveal a path to virulence
AR Wattam, JT Foster, SP Mane, SM Beckstrom-Sternberg, ...
Journal of bacteriology 196 (5), 920-930, 2014
942014
PATtyFams: protein families for the microbial genomes in the PATRIC database
JJ Davis, S Gerdes, GJ Olsen, R Olson, GD Pusch, M Shukla, V Vonstein, ...
Frontiers in microbiology 7, 118, 2016
632016
PATRIC as a unique resource for studying antimicrobial resistance
DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ...
Briefings in bioinformatics 20 (4), 1094-1102, 2019
572019
Brucella spp. of amphibians comprise genomically diverse motile strains competent for replication in macrophages and survival in mammalian hosts
S Al Dahouk, S Köhler, A Occhialini, MPJ De Bagüés, JA Hammerl, ...
Scientific reports 7 (1), 1-17, 2017
562017
Insight of genus Corynebacterium: ascertaining the role of pathogenic and non-pathogenic species
A Oliveira, LC Oliveira, F Aburjaile, L Benevides, S Tiwari, SB Jamal, ...
Frontiers in microbiology 8, 1937, 2017
542017
Assembly, annotation, and comparative genomics in PATRIC, the all bacterial bioinformatics resource center
AR Wattam, T Brettin, JJ Davis, S Gerdes, R Kenyon, D Machi, C Mao, ...
Comparative Genomics, 79-101, 2018
532018
Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway
AR Wattam, TJ Inzana, KP Williams, SP Mane, M Shukla, NF Almeida, ...
MBio 3 (5), e00246-12, 2012
482012
Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway
AR Wattam, TJ Inzana, KP Williams, SP Mane, M Shukla, NF Almeida, ...
MBio 3 (5), e00246-12, 2012
482012
Curation, integration and visualization of bacterial virulence factors in PATRIC
C Mao, D Abraham, AR Wattam, MJC Wilson, M Shukla, HS Yoo, ...
Bioinformatics 31 (2), 252-258, 2015
412015
The system can't perform the operation now. Try again later.
Articles 1–20