| Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia RA Grant, L Morales-Nebreda, NS Markov, S Swaminathan, M Querrey, ... Nature 590 (7847), 635-641, 2021 | 587 | 2021 |
| A first-in-human phase 0 clinical study of RNA interference–based spherical nucleic acids in patients with recurrent glioblastoma P Kumthekar, CH Ko, T Paunesku, K Dixit, AM Sonabend, O Bloch, M Tate, ... Science translational medicine 13 (584), eabb3945, 2021 | 158 | 2021 |
| Metastatic cancers promote cachexia through ZIP14 upregulation in skeletal muscle G Wang, AK Biswas, W Ma, M Kandpal, C Coker, PM Grandgenett, ... Nature medicine 24 (6), 770-781, 2018 | 150 | 2018 |
| FTO-Dependent N6-Methyladenosine Modifications Inhibit Ovarian Cancer Stem Cell Self-Renewal by Blocking cAMP Signaling H Huang, Y Wang, M Kandpal, G Zhao, H Cardenas, Y Ji, A Chaparala, ... Cancer research 80 (16), 3200-3214, 2020 | 149 | 2020 |
| Immune landscapes associated with different glioblastoma molecular subtypes M Martinez-Lage, TM Lynch, Y Bi, C Cocito, GP Way, S Pal, J Haller, ... Acta neuropathologica communications 7, 1-12, 2019 | 134 | 2019 |
| Development and clinical validity of a novel blood-based molecular biomarker for subclinical acute rejection following kidney transplant JJ Friedewald, SM Kurian, RL Heilman, TC Whisenant, ED Poggio, ... American Journal of Transplantation 19 (1), 98-109, 2019 | 105 | 2019 |
| Donor-derived cell-free DNA levels predict graft injury in liver transplant recipients J Levitsky, M Kandpal, K Guo, S Kleiboeker, R Sinha, M Abecassis American Journal of Transplantation 22 (2), 532-540, 2022 | 41 | 2022 |
| Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms M Dapas, M Kandpal, Y Bi, RV Davuluri Briefings in bioinformatics 18 (2), 260-269, 2017 | 39 | 2017 |
| Discovery and validation of a novel blood-based molecular biomarker of rejection following liver transplantation J Levitsky, SK Asrani, T Schiano, A Moss, K Chavin, C Miller, K Guo, ... American Journal of Transplantation 20 (8), 2173-2183, 2020 | 32 | 2020 |
| A clinically relevant murine model unmasks a “two-hit” mechanism for reactivation and dissemination of cytomegalovirus after kidney transplant Z Zhang, L Qiu, S Yan, JJ Wang, PM Thomas, M Kandpal, L Zhao, ... American Journal of Transplantation 19 (9), 2421-2433, 2019 | 30 | 2019 |
| Molecular docking and dynamics simulations of A.niger RNase from Aspergillus niger ATCC26550: for potential prevention of human cancer GR Kumar, R Chikati, SL Pandrangi, M Kandapal, K Sonkar, N Gupta, ... Journal of molecular modeling 19, 613-621, 2013 | 17 | 2013 |
| Prediction of liver transplant rejection with a biologically relevant gene expression signature J Levitsky, M Kandpal, K Guo, L Zhao, S Kurian, T Whisenant, ... Transplantation 106 (5), 1004-1011, 2022 | 15 | 2022 |
| Platform-independent classification system to predict molecular subtypes of high-grade serous ovarian carcinoma A Shilpi, M Kandpal, Y Ji, BL Seagle, S Shahabi, RV Davuluri JCO Clinical Cancer Informatics 3, 1-9, 2019 | 15 | 2019 |
| Association of increased primary breast tumor AGR2 with decreased disease-specific survival P Ann, B Seagle, A Shilpi, M Kandpal, S Shahabi Oncotarget 9, 23114-23125, 2018 | 12 | 2018 |
| Transcriptional consequences of impaired immune cell responses induced by cystic fibrosis plasma characterized via dual RNA sequencing JE Ideozu, V Rangaraj, H Abdala-Valencia, X Zhang, M Kandpal, MA Sala, ... BMC Medical Genomics 12, 1-16, 2019 | 11 | 2019 |
| Data driven fault detection using multi-block PLS based path modeling approach M Kandpal, P Krishnan, L Samavedham Computer Aided Chemical Engineering 31, 1291-1295, 2012 | 10 | 2012 |
| Genetic programming‐based approach to elucidate biochemical interaction networks from data M Kandpal, CM Kalyan, L Samavedham IET systems biology 7 (1), 18-25, 2013 | 8 | 2013 |
| Identification of geographic specific SARS-Cov-2 mutations by random forest classification and variable selection methods M Kandpal, RV Davuluri Statistics and applications 18 (1), 253, 2020 | 7 | 2020 |
| Building genomic analysis pipelines in a hackathon setting with bioinformatician teams: DNA-seq, epigenomics, metagenomics and RNA-seq B Busby, A Dillman, CL Simpson, I Fingerman, S Yun, DM Kristensen, ... BioRxiv, 018085, 2015 | 7 | 2015 |
| Epigenetic reprogramming of host and viral genes by human cytomegalovirus infection in kasumi-3 myeloid progenitor cells at early times postinfection E Forte, F Ayaloglu Butun, C Marinaccio, MJ Schipma, A Piunti, ... Journal of virology 95 (11), 10.1128/jvi. 00183-21, 2021 | 6 | 2021 |
Ramana V DavuluriProfessor of Biomedical Informatics, State University of New York at Stony Brook, Stony Brook, NYVerified email at stonybrookmedicine.edu
