| VSEARCH: a versatile open source tool for metagenomics T Rognes, T Flouri, B Nichols, C Quince, F Mahé PeerJ 4, e2584, 2016 | 4841 | 2016 |
| PEAR: a fast and accurate Illumina Paired-End reAd mergeR J Zhang, K Kobert, T Flouri, A Stamatakis Bioinformatics 30 (5), 614-620, 2014 | 3194 | 2014 |
| Phylogenomics resolves the timing and pattern of insect evolution B Misof, S Liu, K Meusemann, RS Peters, A Donath, C Mayer, ... Science 346 (6210), 763-767, 2014 | 2018 | 2014 |
| RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference AM Kozlov, D Darriba, T Flouri, B Morel, A Stamatakis Bioinformatics 35 (21), 4453-4455, 2019 | 1285 | 2019 |
| ModelTest-NG: a new and scalable tool for the selection of DNA and protein evolutionary models D Darriba, D Posada, AM Kozlov, A Stamatakis, B Morel, T Flouri Molecular biology and evolution 37 (1), 291-294, 2020 | 584 | 2020 |
| VSEARCH: a versatile open source tool for metagenomics. PeerJ 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé | 570 | 2016 |
| Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo P Kapli, S Lutteropp, J Zhang, K Kobert, P Pavlidis, A Stamatakis, T Flouri Bioinformatics 33 (11), 1630-1638, 2017 | 522 | 2017 |
| EPA-ng: massively parallel evolutionary placement of genetic sequences P Barbera, AM Kozlov, L Czech, B Morel, D Darriba, T Flouri, ... Systematic biology 68 (2), 365-369, 2019 | 260 | 2019 |
| Species tree inference with BPP using genomic sequences and the multispecies coalescent T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 35 (10), 2585-2593, 2018 | 206 | 2018 |
| VSEARCH: a versatile open source tool for metagenomics. PeerJ. 2016; 4: e2584 T Rognes, T Flouri, B Nichols, C Quince, F Mahé | 204 | 2016 |
| The phylogenetic likelihood library T Flouri, F Izquierdo-Carrasco, D Darriba, AJ Aberer, LT Nguyen, BQ Minh, ... Systematic biology 64 (2), 356-362, 2015 | 103 | 2015 |
| MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation DT Hoang, LS Vinh, T Flouri, A Stamatakis, A von Haeseler, BQ Minh BMC evolutionary biology 18 (1), 1-11, 2018 | 91 | 2018 |
| Response to Comment on “Phylogenomics resolves the timing and pattern of insect evolution" KM Kjer, JL Ware, A Blanke, A Donath, T Flouri, PB Frandsen, P Kapli, ... Science 349 (6247), 487, 2015 | 77 | 2015 |
| A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis T Flouri, X Jiao, B Rannala, Z Yang Molecular biology and evolution 37 (4), 1211-1223, 2020 | 63 | 2020 |
| An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola) A Vasilikopoulos, B Misof, K Meusemann, D Lieberz, T Flouri, RG Beutel, ... BMC Evolutionary Biology 20 (1), 1-24, 2020 | 46 | 2020 |
| Longest common substrings with k mismatches T Flouri, E Giaquinta, K Kobert, E Ukkonen Information Processing Letters 115 (6-8), 643-647, 2015 | 40 | 2015 |
| The state of software for evolutionary biology D Darriba, T Flouri, A Stamatakis Molecular biology and evolution 35 (5), 1037-1046, 2018 | 35 | 2018 |
| Species delimitation B Rannala, Z Yang Phylogenetics in the genomic era, 5.5: 1--5.5: 18, 2020 | 29 | 2020 |
| Enhanced string covering T Flouri, CS Iliopoulos, T Kociumaka, SP Pissis, SJ Puglisi, WF Smyth, ... Theoretical Computer Science 506, 102-114, 2013 | 29 | 2013 |
| Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments AGP Ford, TR Bullen, L Pang, MJ Genner, R Bills, T Flouri, BP Ngatunga, ... Molecular phylogenetics and evolution 136, 215-226, 2019 | 28 | 2019 |
Alexandros StamatakisHeidelberg Institute for Theoretical Studies and Karlsruhe Institute of TechnologyVerified email at h-its.org
