| Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples DW Lewandowska, O Zagordi, FD Geissberger, V Kufner, S Schmutz, ... Microbiome 5, 1-13, 2017 | 57 | 2017 |
| SARS-CoV-2 variants reveal features critical for replication in primary human cells MO Pohl, I Busnadiego, V Kufner, I Glas, U Karakus, S Schmutz, M Zaheri, ... PLoS biology 19 (3), e3001006, 2021 | 56 | 2021 |
| Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure FX López-Labrador, JR Brown, N Fischer, H Harvala, S Van Boheemen, ... Journal of Clinical Virology 134, 104691, 2021 | 56 | 2021 |
| Two years of viral metagenomics in a tertiary diagnostics unit: evaluation of the first 105 cases V Kufner, A Plate, S Schmutz, DL Braun, HF Günthard, R Capaul, ... Genes 10 (9), 661, 2019 | 45 | 2019 |
| Viral metagenomics in the clinical realm: lessons learned from a Swiss-wide ring trial T Junier, M Huber, S Schmutz, V Kufner, O Zagordi, S Neuenschwander, ... Genes 10 (9), 655, 2019 | 41 | 2019 |
| Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples JJC de Vries, JR Brown, N Fischer, IA Sidorov, S Morfopoulou, J Huang, ... Journal of Clinical Virology 141, 104908, 2021 | 34 | 2021 |
| Meningitis and epididymitis caused by Toscana virus infection imported to Switzerland diagnosed by metagenomic sequencing: a case report F Tschumi, S Schmutz, V Kufner, M Heider, F Pigny, B Schreiner, ... BMC infectious diseases 19, 1-4, 2019 | 27 | 2019 |
| Antibodies from convalescent plasma promote SARS-CoV-2 clearance in individuals with and without endogenous antibody response M Marconato, IA Abela, A Hauser, M Schwarzmüller, R Katzensteiner, ... The Journal of Clinical Investigation 132 (12), 2022 | 26 | 2022 |
| Swiss public health measures associated with reduced SARS-CoV-2 transmission using genome data SA Nadeau, TG Vaughan, C Beckmann, I Topolsky, C Chen, E Hodcroft, ... Science translational medicine 15 (680), eabn7979, 2022 | 22 | 2022 |
| Does respiratory co-infection facilitate dispersal of SARS-CoV-2? investigation of a super-spreading event in an open-space office D Weissberg, J Böni, SK Rampini, V Kufner, M Zaheri, PW Schreiber, ... Antimicrobial Resistance & Infection Control 9, 1-8, 2020 | 22 | 2020 |
| Metagenomic virome sequencing in living donor and recipient kidney transplant pairs revealed JC polyomavirus transmission PW Schreiber, V Kufner, K Hübel, S Schmutz, O Zagordi, A Kaur, ... Clinical Infectious Diseases 69 (6), 987-994, 2019 | 19 | 2019 |
| External quality assessment of SARS-CoV-2 sequencing: an ESGMD-SSM pilot trial across 15 European laboratories F Wegner, T Roloff, M Huber, S Cordey, A Ramette, Y Gerth, C Bertelli, ... Journal of clinical microbiology 60 (1), e01698-21, 2022 | 15 | 2022 |
| Quantifying SARS-CoV-2 spread in Switzerland based on genomic sequencing data S Nadeau, C Beckmann, I Topolsky, T Vaughan, E Hodcroft, T Schär, ... medRxiv, 2020.10. 14.20212621, 2020 | 12 | 2020 |
| Nosocomial COVID-19 incidence and secondary attack rates among patients of tertiary care center, Zurich, Switzerland A Wolfensberger, V Kufner, M Zaheri, M Zeeb, I Nortes, PW Schreiber, ... Emerging Infectious Diseases 28 (10), 2087, 2022 | 6 | 2022 |
| Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples. Microbiome. 2017; 5 (1): 94 DW Lewandowska, O Zagordi, FD Geissberger, V Kufner, S Schmutz, ... PubMed Abstract| Publisher Full Text| Free Full Text, 0 | 6 | |
| Distinct phenotypes of SARS-CoV-2 isolates reveal viral traits critical for replication in primary human respiratory cells MO Pohl, I Busnadiego, V Kufner, I Glas, U Karakus, S Schmutz, M Zaheri, ... | 5 | 2020 |
| Viral metagenomics in the clinical realm: lessons learned from a Swiss-wide ring trial. Genes (Basel) 10: 655 T Junier, M Huber, S Schmutz, V Kufner, O Zagordi, S Neuenschwander, ... | 5 | 2019 |
| Rapid and sensitive single-sample viral metagenomics using Nanopore Flongle sequencing I Pichler, S Schmutz, G Ziltener, M Zaheri, V Kufner, A Trkola, M Huber Journal of Virological Methods 320, 114784, 2023 | 3 | 2023 |
| Contribution of endogenous and exogenous antibodies to clearance of SARS-CoV-2 during convalescent plasma therapy M Marconato, IA Abela, A Hauser, M Schwarzmüller, R Katzensteiner, ... medRxiv, 2021.12. 09.21267513, 2021 | 2 | 2021 |
| SARS-CoV-2 viroporin triggers the NLRP3 inflammatory pathway (preprint) H Xu, SA Chitre, IA Akinyemi, JC Loeb, JA Lednicky, MT McIntosh, ... | 1 | 2020 |
