Widespread transcription at neuronal activity-regulated enhancers TK Kim, M Hemberg, JM Gray, AM Costa, DM Bear, J Wu, DA Harmin, ... Nature 465 (7295), 182-187, 2010 | 2716 | 2010 |
The human cell atlas A Regev, SA Teichmann, ES Lander, I Amit, C Benoist, E Birney, ... elife 6, e27041, 2017 | 2211 | 2017 |
SC3: consensus clustering of single-cell RNA-seq data VY Kiselev, K Kirschner, MT Schaub, T Andrews, A Yiu, T Chandra, ... Nature methods 14 (5), 483-486, 2017 | 1418 | 2017 |
Transcriptome-wide noise controls lineage choice in mammalian progenitor cells HH Chang, M Hemberg, M Barahona, DE Ingber, S Huang Nature 453 (7194), 544-547, 2008 | 1265 | 2008 |
Challenges in unsupervised clustering of single-cell RNA-seq data VY Kiselev, TS Andrews, M Hemberg Nature Reviews Genetics 20 (5), 273-282, 2019 | 1031 | 2019 |
Temporal tracking of microglia activation in neurodegeneration at single-cell resolution H Mathys, C Adaikkan, F Gao, JZ Young, E Manet, M Hemberg, ... Cell reports 21 (2), 366-380, 2017 | 672 | 2017 |
scmap: projection of single-cell RNA-seq data across data sets VY Kiselev, A Yiu, M Hemberg Nature methods 15 (5), 359-362, 2018 | 600 | 2018 |
Disruption of DNA-methylation-dependent long gene repression in Rett syndrome HW Gabel, B Kinde, H Stroud, CS Gilbert, DA Harmin, NR Kastan, ... Nature 522 (7554), 89-93, 2015 | 582 | 2015 |
Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection SW Flavell, TK Kim, JM Gray, DA Harmin, M Hemberg, EJ Hong, ... Neuron 60 (6), 1022-1038, 2008 | 534 | 2008 |
Tau promotes neurodegeneration through global chromatin relaxation B Frost, M Hemberg, J Lewis, MB Feany Nature neuroscience 17 (3), 357-366, 2014 | 478 | 2014 |
Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map OA Bayraktar, T Bartels, S Holmqvist, V Kleshchevnikov, A Martirosyan, ... Nature neuroscience 23 (4), 500-509, 2020 | 395 | 2020 |
Trophic levels and trophic tangles: the prevalence of omnivory in real food webs RM Thompson, M Hemberg, BM Starzomski, JB Shurin Ecology 88 (3), 612-617, 2007 | 391 | 2007 |
Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes H Heaton, AM Talman, A Knights, M Imaz, DJ Gaffney, R Durbin, ... Nature methods 17 (6), 615-620, 2020 | 341 | 2020 |
Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function S Cohen, HW Gabel, M Hemberg, AN Hutchinson, LA Sadacca, DH Ebert, ... Neuron 72 (1), 72-85, 2011 | 337 | 2011 |
Identifying cell populations with scRNASeq TS Andrews, M Hemberg Molecular aspects of medicine 59, 114-122, 2018 | 298 | 2018 |
Genome-wide identification and characterization of functional neuronal activity–dependent enhancers AN Malik, T Vierbuchen, M Hemberg, AA Rubin, E Ling, CH Couch, ... Nature neuroscience 17 (10), 1330-1339, 2014 | 291 | 2014 |
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data TS Andrews, VY Kiselev, D McCarthy, M Hemberg Nature protocols 16 (1), 1-9, 2021 | 281 | 2021 |
M3Drop: dropout-based feature selection for scRNASeq TS Andrews, M Hemberg Bioinformatics 35 (16), 2865-2867, 2019 | 276 | 2019 |
The Malaria Cell Atlas: Single parasite transcriptomes across the complete Plasmodium life cycle VM Howick, AJC Russell, T Andrews, H Heaton, AJ Reid, K Natarajan, ... Science 365 (6455), eaaw2619, 2019 | 247 | 2019 |
Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers TK Kim, M Hemberg, JM Gray Cold Spring Harbor perspectives in biology 7 (1), a018622, 2015 | 222 | 2015 |