Gregory D. Sepich-Poore

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDVerified email at ucsd.edu
Sandrine Javorschi-Miller-MontgomeryMicronomaVerified email at micronoma.com
Stephen WandroMicronomaVerified email at micronoma.com
Serena FraraccioSr Scientist at Micronoma Inc.Verified email at micronoma.com
Robert K. HeatonUniversity of California San DiegoVerified email at ucsd.edu
Se Jin SongUniversity of California San DiegoVerified email at ucsd.edu
Evguenia KopylovaHost-microbiome data analysis | Managing Director, Clarity GenomicsVerified email at clarity-genomics.com
Sandip Pravin PatelUniversity of California San DiegoVerified email at ucsd.edu
Jessica L. MetcalfAssociate Professor, Colorado State University, Fort Collins, COVerified email at colostate.edu
Qiyun ZhuArizona State UniversityVerified email at asu.edu
Tomasz KościółekSilesian University of TechnologyVerified email at polsl.pl
Stefan JanssenJustus Liebig University, Giessen, GermanyVerified email at computational.bio.uni-giessen.de
John R McPhersonAssociate in Research, Centre for Computational Biology, Duke-NUS Graduate Medical SchoolVerified email at duke-nus.edu.sg
Weng Khong LimChief Information Officer, SingHealth Duke-NUS Institute of Precision MedicineVerified email at duke-nus.edu.sg
Patrick TanDuke-NUS Medical SchoolVerified email at duke-nus.edu.sg
Ioana CutcutachePrincipal Scientist, UCB PharmaVerified email at ucb.com
Bin Tean TehDeputy Director (Research), National Cancer Centre SingaporeVerified email at singhealth.com.sg
Mikael HartmanAssociate professor, Department of Surgery , National University of SingaporeVerified email at nus.edu.sg
Steven G. RozenDuke University School of MedicineVerified email at duke.edu
TAN JINGPI in SYSUCC and Senior Scientist in NCCSVerified email at sysucc.org.cn

Gregory D. Sepich-Poore

MD/PhD Candidate at UC San Diego School of Medicine

Verified email at cloud.ucsd.edu

cancer microbiome machine learning bioinformatics


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Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567-574, 2020	791	2020
The microbiome and human cancer GD Sepich-Poore, L Zitvogel, R Straussman, J Hasty, JA Wargo, R Knight Science 371 (6536), eabc4552, 2021	621	2021
Translocation of viable gut microbiota to mesenteric adipose drives formation of creeping fat in humans CWY Ha, A Martin, GD Sepich-Poore, B Shi, Y Wang, K Gouin, ... Cell 183 (3), 666-683. e17, 2020	242	2020
Exome sequencing identifies highly recurrent MED12 somatic mutations in breast fibroadenoma WK Lim, CK Ong, J Tan, AA Thike, CCY Ng, V Rajasegaran, SS Myint, ... Nature genetics 46 (8), 877-880, 2014	217	2014
Genomic landscapes of breast fibroepithelial tumors J Tan, CK Ong, WK Lim, CCY Ng, AA Thike, LM Ng, V Rajasegaran, ... Nature genetics 47 (11), 1341-1345, 2015	199	2015
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions L Narunsky-Haziza, GD Sepich-Poore, I Livyatan, O Asraf, C Martino, ... Cell 185 (20), 3789-3806. e17, 2022	183	2022
JAK-STAT and G-protein-coupled receptor signaling pathways are frequently altered in epitheliotropic intestinal T-cell lymphoma ML Nairismägi, J Tan, JQ Lim, S Nagarajan, CCY Ng, V Rajasegaran, ... Leukemia 30 (6), 1311-1319, 2016	139	2016
Microbial ecology of Atlantic salmon (Salmo salar) hatcheries: impacts of the built environment on fish mucosal microbiota JJ Minich, GD Poore, K Jantawongsri, C Johnston, K Bowie, J Bowman, ... Applied and environmental microbiology 86 (12), e00411-20, 2020	86	2020
Mutational landscapes of tongue carcinoma reveal recurrent mutations in genes of therapeutic and prognostic relevance AL Vettore, K Ramnarayanan, G Poore, K Lim, CK Ong, KK Huang, ... Genome medicine 7, 1-15, 2015	85	2015
Mortality risk profiling of Staphylococcus aureus bacteremia by multi-omic serum analysis reveals early predictive and pathogenic signatures JM Wozniak, RH Mills, J Olson, JR Caldera, GD Sepich-Poore, ... Cell 182 (5), 1311-1327. e14, 2020	65	2020
The microbiome and prostate cancer J Javier-DesLoges, RR McKay, AD Swafford, GD Sepich-Poore, R Knight, ... Prostate cancer and prostatic diseases 25 (2), 159-164, 2022	31	2022
Phylogeny-aware analysis of metagenome community ecology based on matched reference genomes while bypassing taxonomy Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... Msystems 7 (2), e00167-22, 2022	30	2022
Using all our genomes: Blood‐based liquid biopsies for the early detection of cancer E Adams, GD Sepich‐Poore, S Miller‐Montgomery, R Knight View 3 (1), 20200118, 2022	28	2022
A miRNA host response signature accurately discriminates acute respiratory infection etiologies GD Poore, ER Ko, A Valente, R Henao, K Sumner, C Hong, TW Burke, ... Frontiers in microbiology 9, 2957, 2018	20	2018
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis RC Brewer, TV Lanz, CR Hale, GD Sepich-Poore, C Martino, AD Swafford, ... Science translational medicine 15 (684), eabq8476, 2023	17	2023
Redrawing therapeutic boundaries: microbiota and cancer J Sholl, GD Sepich-Poore, R Knight, T Pradeu Trends in cancer 8 (2), 87-97, 2022	15	2022
OGUs enable effective, phylogeny-aware analysis of even shallow metagenome community structures Q Zhu, S Huang, A Gonzalez, I McGrath, D McDonald, N Haiminen, ... bioRxiv, 2021.04. 04.438427, 2021	15	2021
Cancer's second genome: Microbial cancer diagnostics and redefining clonal evolution as a multispecies process GD Sepich‐Poore, C Guccione, L Laplane, T Pradeu, K Curtius, R Knight BioEssays, 2100252, 2022	13	2022
Intratumoral bacteria generate a new class of therapeutically relevant tumor antigens in melanoma GD Sepich-Poore, H Carter, R Knight Cancer Cell 39 (5), 601-603, 2021	12	2021
Reply to: caution regarding the specificities of pan-cancer microbial structure GD Sepich-Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, ... bioRxiv, 2023.02. 10.528049, 2023	8	2023

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