John David Osborne
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Annotating the human genome with Disease Ontology
JD Osborne, J Flatow, M Holko, SM Lin, WA Kibbe, L Zhu, MI Danila, ...
BMC genomics 10, 1-8, 2009
Genome sequence diversity and clues to the evolution of variola (smallpox) virus
JJ Esposito, SA Sammons, AM Frace, JD Osborne, M Olsen-Rasmussen, ...
Science 313 (5788), 807-812, 2006
Type 1 and Type 2 Strains of Mycoplasma pneumoniae Form Different Biofilms
WL Simmons, JM Daubenspeck, JD Osborne, MF Balish, KB Waites, ...
Microbiology, 2013
Comparative genome analysis of Mycoplasma pneumoniae
L Xiao, T Ptacek, JD Osborne, DM Crabb, WL Simmons, EJ Lefkowitz, ...
BMC genomics 16, 1-16, 2015
Poxvirus orthologous clusters (POCs)
A Ehlers, J Osborne, S Slack, RL Roper, C Upton
Bioinformatics 18 (11), 1544-1545, 2002
Efficient identification of nationally mandated reportable cancer cases using natural language processing and machine learning
JD Osborne, M Wyatt, AO Westfall, J Willig, S Bethard, G Gordon
Journal of the American Medical Informatics Association 23 (6), 1077-1084, 2016
Genomic differences of Vaccinia virus clones from Dryvax smallpox vaccine: the Dryvax-like ACAM2000 and the mouse neurovirulent Clone-3
JD Osborne, M Da Silva, AM Frace, SA Sammons, M Olsen-Rasmussen, ...
Vaccine 25 (52), 8807-8832, 2007
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ...
Clinical and translational science 15 (8), 1848-1855, 2022
Genomic sequence and analysis of a vaccinia virus isolate from a patient with a smallpox vaccine-related complication
G Li, N Chen, Z Feng, RML Buller, J Osborne, T Harms, I Damon, C Upton, ...
Virology Journal 3, 1-9, 2006
Mining biomedical data using MetaMap transfer (MMtx) and the unified medical language system (UMLS)
JD Osborne, S Lin, LJ Zhu, WA Kibbe
Gene Function Analysis, 153-169, 2007
Interpreting microarray results with gene ontology and MeSH
JD Osborne, L Zhu, SM Lin, WA Kibbe
Microarray Data Analysis: Methods and Applications, 223-241, 2007
GeneChip resequencing of the smallpox virus genome can identify novel strains: a biodefense application
IM Sulaiman, K Tang, J Osborne, S Sammons, RM Wohlhueter
Journal of Clinical Microbiology 45 (2), 358-363, 2007
Reduction of hydrogen peroxide accumulation and toxicity by a catalase from Mycoplasma iowae
RE Pritchard, AJ Prassinos, JD Osborne, Z Raviv, MF Balish
PLoS One 9 (8), e105188, 2014
Evaluation of YTEX and MetaMap for clinical concept recognition
JD Osborne, B Gyawali, T Solorio
arXiv preprint arXiv:1402.1668, 2014
Progress toward a universal biomedical data translator
K Fecho, AE Thessen, SE Baranzini, C Bizon, JJ Hadlock, S Huang, ...
Clinical and Translational Science 15 (8), 1838-1847, 2022
GeneRIF is a more comprehensive, current and computationally tractable source of gene-disease relationships than OMIM
JD Osborne, S Lin, WA Kibbe, L Zhu, MI Danila, RL Chisholm
Bioinformatics Core, Northwestern University Technical Report, 2007
Draft Genome Sequence of Hymenobacter sp. Strain IS2118, Isolated from a Freshwater Lake in Schirmacher Oasis, Antarctica, Reveals Diverse Genes for …
H Koo, T Ptacek, M Crowley, AK Swain, JD Osborne, AK Bej, ...
Genome announcements 2 (4), 10.1128/genomea. 00739-14, 2014
The precision medicine process for treating rare disease using the artificial intelligence tool mediKanren
A Foksinska, CM Crowder, AB Crouse, J Henrikson, WE Byrd, ...
Frontiers in Artificial Intelligence 5, 205, 2022
Machine classification of melanoma and nevi from skin lesions
JD Osborne, S Gao, W Chen, A Andea, C Zhang
Proceedings of the 2011 ACM Symposium on Applied Computing, 100-105, 2011
Other riffs on cooperation are already showing how well a wiki could work
JD Osborne, S Lin, WA Kibbe
Nature 446 (7138), 856-856, 2007
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Articles 1–20