Eric Alm
Eric Alm
Professor of Biological Engineering, MIT
Verified email at mit.edu - Homepage
Title
Cited by
Cited by
Year
Structure, function and diversity of the healthy human microbiome
Human Microbiome Project Consortium
nature 486 (7402), 207, 2012
71292012
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
32142019
A framework for human microbiome research
BA Methé, KE Nelson, M Pop, HH Creasy, MG Giglio, C Huttenhower, ...
nature 486 (7402), 215, 2012
17382012
Inferring correlation networks from genomic survey data
J Friedman, EJ Alm
Public Library of Science 8 (9), e1002687, 2012
11742012
Ecology drives a global network of gene exchange connecting the human microbiome
CS Smillie, MB Smith, J Friedman, OX Cordero, LA David, EJ Alm
Nature 480 (7376), 241-244, 2011
7222011
Host lifestyle affects human microbiota on daily timescales
LA David, AC Materna, J Friedman, MI Campos-Baptista, MC Blackburn, ...
Genome biology 15 (7), 1-15, 2014
6552014
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
6142018
Salt-responsive gut commensal modulates TH 17 axis and disease
N Wilck, MG Matus, SM Kearney, SW Olesen, K Forslund, ...
Nature 551 (7682), 585-589, 2017
5592017
Resource partitioning and sympatric differentiation among closely related bacterioplankton
DE Hunt, LA David, D Gevers, SP Preheim, EJ Alm, MF Polz
Science 320 (5879), 1081-1085, 2008
4982008
Fecal Microbiota Transplant for Relapsing Clostridium difficile Infection Using a Frozen Inoculum From Unrelated Donors: A Randomized, Open-Label, Controlled …
I Youngster, J Sauk, C Pindar, RG Wilson, JL Kaplan, MB Smith, EJ Alm, ...
Clinical Infectious Diseases 58 (11), 1515-1522, 2014
4742014
Meta-analysis of gut microbiome studies identifies disease-specific and shared responses
C Duvallet, SM Gibbons, T Gurry, RA Irizarry, EJ Alm
Nature communications 8 (1), 1-10, 2017
4612017
MicrobesOnline: an integrated portal for comparative and functional genomics
PS Dehal, MP Joachimiak, MN Price, JT Bates, JK Baumohl, D Chivian, ...
Nucleic acids research 38 (suppl_1), D396-D400, 2010
4592010
Experiment and theory highlight role of native state topology in SH3 folding
DS Riddle, VP Grantcharova, JV Santiago, E Alm, I Ruczinski, D Baker
Nature structural biology 6 (11), 1016-1024, 1999
4581999
Critical role of β-hairpin formation in protein G folding
EL McCallister, E Alm, D Baker
Nature structural biology 7 (8), 669-673, 2000
4572000
Population genomics of early events in the ecological differentiation of bacteria
BJ Shapiro, J Friedman, OX Cordero, SP Preheim, SC Timberlake, ...
science 336 (6077), 48-51, 2012
4532012
The bacterial species challenge: making sense of genetic and ecological diversity
C Fraser, EJ Alm, MF Polz, BG Spratt, WP Hanage
Science 323 (5915), 741-746, 2009
4472009
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
4402008
Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
E Alm, D Baker
Proceedings of the National Academy of Sciences 96 (20), 11305-11310, 1999
4401999
A novel method for accurate operon predictions in all sequenced prokaryotes
MN Price, KH Huang, EJ Alm, AP Arkin
Nucleic acids research 33 (3), 880-892, 2005
4392005
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
S Weiss, W Van Treuren, C Lozupone, K Faust, J Friedman, Y Deng, ...
The ISME journal 10 (7), 1669-1681, 2016
4232016
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