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Eric E. Allen
Eric E. Allen
Professor of Marine Microbiology, University of California San Diego
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson, J Chapman, P Hugenholtz, EE Allen, RJ Ram, PM Richardson, ...
Nature 428 (6978), 37-43, 2004
28092004
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
PJ Keeling, F Burki, HM Wilcox, B Allam, EE Allen, LA Amaral-Zettler, ...
PLoS biology 12 (6), e1001889, 2014
10182014
The genome of a motile marine Synechococcus
B Palenik, B Brahamsha, FW Larimer, M Land, L Hauser, P Chain, ...
Nature 424 (6952), 1037-1042, 2003
7782003
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
5772021
The yeast genome directory
AEA Goffeau, R Aert, ML Agostini-Carbone, A Ahmed, M Aigle, ...
Nature 387 (6632), 5-6, 1997
5281997
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species
PA Morin, FI Archer, AD Foote, J Vilstrup, EE Allen, P Wade, J Durban, ...
Genome research 20 (7), 908-916, 2010
5132010
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
N Ziemert, S Podell, K Penn, JH Badger, E Allen, PR Jensen
PloS one 7 (3), e34064, 2012
4812012
Community cyberinfrastructure for advanced microbial ecology research and analysis: the CAMERA resource
S Sun, J Chen, W Li, I Altintas, A Lin, S Peltier, K Stocks, EE Allen, ...
Nucleic acids research 39 (suppl_1), D546-D551, 2010
3892010
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ...
The ISME journal 6 (1), 81-93, 2012
3862012
Genome-Directed Isolation of the Key Nitrogen Fixer Leptospirillum ferrodiazotrophum sp. nov. from an Acidophilic Microbial Community
GW Tyson, I Lo, BJ Baker, EE Allen, P Hugenholtz, JF Banfield
Applied and environmental microbiology 71 (10), 6319-6324, 2005
3022005
Community genomics in microbial ecology and evolution
EE Allen, JF Banfield
Nature reviews microbiology 3 (6), 489-498, 2005
2992005
Biosynthesis of polybrominated aromatic organic compounds by marine bacteria
V Agarwal, AA El Gamal, K Yamanaka, D Poth, RD Kersten, M Schorn, ...
Nature chemical biology 10 (8), 640-647, 2014
2842014
Monounsaturated but Not Polyunsaturated Fatty Acids Are Required for Growth of the Deep-Sea BacteriumPhotobacterium profundum SS9 at High Pressure and …
EE Allen, D Facciotti, DH Bartlett
Applied and Environmental Microbiology 65 (4), 1710-1720, 1999
2751999
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria
I Lo, VJ Denef, NC VerBerkmoes, MB Shah, D Goltsman, G DiBartolo, ...
Nature 446 (7135), 537-541, 2007
2662007
Defining and quantifying the core microbiome: challenges and prospects
AT Neu, EE Allen, K Roy
Proceedings of the National Academy of Sciences 118 (51), e2104429118, 2021
2602021
Lineages of acidophilic archaea revealed by community genomic analysis
BJ Baker, GW Tyson, RI Webb, J Flanagan, P Hugenholtz, EE Allen, ...
Science 314 (5807), 1933-1935, 2006
2392006
Structure and regulation of the omega-3 polyunsaturated fatty acid synthase genes from the deep-sea bacterium Photobacterium profundum strain SS9
EE Allen, DH Bartlett
Microbiology 148 (6), 1903-1913, 2002
2382002
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria
K Penn, C Jenkins, M Nett, DW Udwary, EA Gontang, RP McGlinchey, ...
The ISME journal 3 (10), 1193-1203, 2009
2292009
Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways
RC Coates, S Podell, A Korobeynikov, A Lapidus, P Pevzner, ...
PloS one 9 (1), e85140, 2014
1932014
Compositional differences in particle‐associated and free‐living microbial assemblages from an extreme deep‐ocean environment
EA Eloe, CN Shulse, DW Fadrosh, SJ Williamson, EE Allen, DH Bartlett
Environmental microbiology reports 3 (4), 449-458, 2011
1842011
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