Christian Schudoma
Christian Schudoma
Bioinformatics Cloud and Workflow Engineer
Verified email at embl.de
Title
Cited by
Cited by
Year
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
BJ Clavijo, L Venturini, C Schudoma, GG Accinelli, G Kaithakottil, J Wright, ...
Genome research 27 (5), 885-896, 2017
3102017
Endogenous Arabidopsis messenger RNAs transported to distant tissues
CJ Thieme, M Rojas-Triana, E Stecyk, C Schudoma, W Zhang, L Yang, ...
Nature Plants 1 (4), 1-9, 2015
2612015
Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains
CA Bücherl, IK Jarsch, C Schudoma, C Segonzac, M Mbengue, ...
Elife 6, e25114, 2017
1412017
Cracking the elusive alignment hypothesis: the microtubule–cellulose synthase nexus unraveled
M Bringmann, B Landrein, C Schudoma, O Hamant, MT Hauser, ...
Trends in plant science 17 (11), 666-674, 2012
1122012
Cloning of the wheat Yr15 resistance gene sheds light on the plant tandem kinase-pseudokinase family
V Klymiuk, E Yaniv, L Huang, D Raats, A Fatiukha, S Chen, L Feng, ...
Nature communications 9 (1), 1-12, 2018
1092018
Detection and characterization of 3D-signature phosphorylation site motifs and their contribution towards improved phosphorylation site prediction in proteins
P Durek, C Schudoma, W Weckwerth, J Selbig, D Walther
BMC bioinformatics 10 (1), 1-17, 2009
782009
Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions
PC Bailey, C Schudoma, W Jackson, E Baggs, G Dagdas, W Haerty, ...
Genome biology 19 (1), 1-18, 2018
632018
Sequence–structure relationships in RNA loops: establishing the basis for loop homology modeling
C Schudoma, P May, V Nikiforova, D Walther
Nucleic acids research 38 (3), 970-980, 2010
482010
Give it AGO: The search for miRNA-Argonaute sorting signals in Arabidopsis thaliana indicates a relevance of sequence positions other than the 5′-position alone
CJ Thieme, C Schudoma, P May, D Walther
Frontiers in plant science 3, 272, 2012
392012
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
S Janssen, C Schudoma, G Steger, R Giegerich
BMC bioinformatics 12 (1), 1-19, 2011
332011
Comparison of efficiency and specificity of CRISPR-associated (Cas) nucleases in plants: an expanded toolkit for precision genome engineering
O Raitskin, C Schudoma, A West, NJ Patron
PLoS One 14 (2), e0211598, 2019
262019
Data management pipeline for plant phenotyping in a multisite project
K Billiau, H Sprenger, C Schudoma, D Walther, KI Köhl
Functional Plant Biology 39 (11), 948-957, 2012
242012
Use of TILLING and robotised enzyme assays to generate an allelic series of Arabidopsis thaliana mutants with altered ADP-glucose pyrophosphorylase activity
N Hädrich, Y Gibon, C Schudoma, T Altmann, JE Lunn, M Stitt
Journal of plant physiology 168 (12), 1395-1405, 2011
242011
Assessment of drought tolerance and its potential yield penalty in potato
H Sprenger, K Rudack, C Schudoma, A Neumann, S Seddig, R Peters, ...
Functional Plant Biology 42 (7), 655-667, 2015
202015
Convergent loss of an EDS1/PAD4 signaling pathway in several plant lineages reveals coevolved components of plant immunity and drought response
EL Baggs, JG Monroe, AS Thanki, R O’Grady, C Schudoma, W Haerty, ...
The Plant Cell 32 (7), 2158-2177, 2020
172020
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads
D Ikeue, C Schudoma, W Zhang, Y Ogata, T Sakamoto, T Kurata, ...
Plant methods 11 (1), 1-16, 2015
172015
Modeling RNA loops using sequence homology and geometric constraints
C Schudoma, P May, D Walther
Bioinformatics 26 (13), 1671-1672, 2010
122010
Conducting molecular biomarker discovery studies in plants
C Schudoma, M Steinfath, H Sprenger, JT van Dongen, D Hincha, ...
High-Throughput Phenotyping in Plants, 127-150, 2012
92012
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes
BM Perez-Sepulveda, D Heavens, CV Pulford, AV Predeus, R Low, ...
BioRxiv, 2020
82020
Genomic and phylogenetic analysis of Salmonella Typhimurium and its monophasic variants responsible for invasive endemic infections in Colombia
Y Li, CV Pulford, P Díaz, BM Perez-Sepulveda, C Duarte, AV Predeus, ...
BioRxiv, 588608, 2019
52019
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Articles 1–20