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Jack Kuipers
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Tree inference for single-cell data
K Jahn, J Kuipers, N Beerenwinkel
Genome biology 17 (1), 1-17, 2016
2952016
Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics
K Morita, F Wang, K Jahn, T Hu, T Tanaka, Y Sasaki, J Kuipers, S Loghavi, ...
Nature communications 11 (1), 5327, 2020
2792020
Single-cell sequencing data reveal widespread recurrence and loss of mutational hits in the life histories of tumors
J Kuipers, K Jahn, BJ Raphael, N Beerenwinkel
Genome research 27 (11), 1885-1894, 2017
1382017
Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data
S Malikic, K Jahn, J Kuipers, SC Sahinalp, N Beerenwinkel
Nature communications 10 (1), 2750, 2019
1262019
Advances in understanding tumour evolution through single-cell sequencing
J Kuipers, K Jahn, N Beerenwinkel
Biochimica et Biophysica Acta (BBA)-Reviews on Cancer 1867 (2), 127-138, 2017
1262017
Using directed acyclic graphs in epidemiological research in psychosis: an analysis of the role of bullying in psychosis
G Moffa, G Catone, J Kuipers, E Kuipers, D Freeman, S Marwaha, ...
Schizophrenia bulletin 43 (6), 1273-1279, 2017
1242017
Statistical benchmark for BosonSampling
M Walschaers, J Kuipers, JD Urbina, K Mayer, MC Tichy, K Richter, ...
New Journal of Physics 18 (3), 032001, 2016
1152016
Single-cell mutation identification via phylogenetic inference
J Singer, J Kuipers, K Jahn, N Beerenwinkel
Nature communications 9 (1), 5144, 2018
972018
Partition MCMC for inference on acyclic digraphs
J Kuipers, G Moffa
Journal of the American Statistical Association 112 (517), 282-299, 2017
872017
The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support
A Irmisch, X Bonilla, S Chevrier, KV Lehmann, F Singer, NC Toussaint, ...
Cancer cell 39 (3), 288-293, 2021
762021
Addendum on the scoring of Gaussian directed acyclic graphical models
J Kuipers, G Moffa, D Heckerman
662014
Efficient sampling and structure learning of Bayesian networks
J Kuipers, P Suter, G Moffa
Journal of Computational and Graphical Statistics 31 (3), 639-650, 2022
622022
Nucleated dwarf elliptical galaxies in the Virgo cluster
NI Grant, JA Kuipers, S Phillipps
Monthly Notices of the Royal Astronomical Society 363 (3), 1019-1030, 2005
582005
Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers
AL Hofmann, J Behr, J Singer, J Kuipers, C Beisel, P Schraml, H Moch, ...
BMC bioinformatics 18 (1), 1-15, 2017
482017
Tracing clonal dynamics reveals that two-and three-dimensional patient-derived cell models capture tumor heterogeneity of clear cell renal cell carcinoma
HA Bolck, C Corrò, A Kahraman, A von Teichman, NC Toussaint, ...
European urology focus 7 (1), 152-162, 2021
452021
SCIM: universal single-cell matching with unpaired feature sets
SG Stark, J Ficek, F Locatello, X Bonilla, S Chevrier, F Singer, G Rätsch, ...
Bioinformatics 36 (Supplement_2), i919-i927, 2020
452020
Universality in chaotic quantum transport: The concordance between random-matrix and semiclassical theories
G Berkolaiko, J Kuipers
Physical Review E 85 (4), 045201, 2012
422012
Links between psychotic and neurotic symptoms in the general population: an analysis of longitudinal British National Survey data using Directed Acyclic Graphs
J Kuipers, G Moffa, E Kuipers, D Freeman, P Bebbington
Psychological Medicine 49 (3), 388-395, 2019
412019
Multiparticle correlations in mesoscopic scattering: Boson sampling, birthday paradox, and Hong-Ou-Mandel profiles
JD Urbina, J Kuipers, S Matsumoto, Q Hummel, K Richter
Physical review letters 116 (10), 100401, 2016
412016
Moments of the Wigner delay times
G Berkolaiko, J Kuipers
Journal of Physics A: Mathematical and Theoretical 43 (3), 035101, 2009
402009
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Articles 1–20