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Danielle L Swaney
Danielle L Swaney
Verified email at ucsf.edu
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Year
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing
DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ...
Nature 583 (7816), 459-468, 2020
44972020
The global phosphorylation landscape of SARS-CoV-2 infection
M Bouhaddou, D Memon, B Meyer, KM White, VV Rezelj, MC Marrero, ...
Cell 182 (3), 685-712. e19, 2020
8882020
Global analysis of phosphorylation and ubiquitylation cross-talk in protein degradation
DL Swaney, P Beltrao, L Starita, A Guo, J Rush, S Fields, NJ Krogan, ...
Nature methods 10 (7), 676-682, 2013
6832013
Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms
DE Gordon, J Hiatt, M Bouhaddou, VV Rezelj, S Ulferts, H Braberg, ...
Science 370 (6521), eabe9403, 2020
6342020
Value of using multiple proteases for large-scale mass spectrometry-based proteomics
DL Swaney, CD Wenger, JJ Coon
Journal of proteome research 9 (3), 1323-1329, 2010
5282010
Systematic functional prioritization of protein posttranslational modifications
P Beltrao, V Albanèse, LR Kenner, DL Swaney, A Burlingame, J Villén, ...
Cell 150 (2), 413-425, 2012
4432012
Supplemental activation method for high-efficiency electron-transfer dissociation of doubly protonated peptide precursors
DL Swaney, GC McAlister, M Wirtala, JC Schwartz, JEP Syka, JJ Coon
Analytical chemistry 79 (2), 477-485, 2007
4312007
An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike
M Schoof, B Faust, RA Saunders, S Sangwan, V Rezelj, N Hoppe, ...
Science 370 (6523), 1473-1479, 2020
3822020
Evolution of enhanced innate immune evasion by SARS-CoV-2
LG Thorne, M Bouhaddou, AK Reuschl, L Zuliani-Alvarez, B Polacco, ...
Nature 602 (7897), 487-495, 2022
3812022
Probing the dynamics of O-GlcNAc glycosylation in the brain using quantitative proteomics
N Khidekel, SB Ficarro, PM Clark, MC Bryan, DL Swaney, JE Rexach, ...
Nature chemical biology 3 (6), 339-348, 2007
3802007
Decision tree–driven tandem mass spectrometry for shotgun proteomics
DL Swaney, GC McAlister, JJ Coon
Nature methods 5 (11), 959-964, 2008
3742008
The functional landscape of the human phosphoproteome
D Ochoa, AF Jarnuczak, C Viéitez, M Gehre, M Soucheray, A Mateus, ...
Nature biotechnology 38 (3), 365-373, 2020
3322020
Proteomic and phosphoproteomic comparison of human ES and iPS cells
DH Phanstiel, J Brumbaugh, CD Wenger, S Tian, MD Probasco, DJ Bailey, ...
Nature methods 8 (10), 821-827, 2011
3122011
Comparative flavivirus-host protein interaction mapping reveals mechanisms of dengue and Zika virus pathogenesis
PS Shah, N Link, GM Jang, PP Sharp, T Zhu, DL Swaney, JR Johnson, ...
Cell 175 (7), 1931-1945. e18, 2018
2822018
Human embryonic stem cell phosphoproteome revealed by electron transfer dissociation tandem mass spectrometry
DL Swaney, CD Wenger, JA Thomson, JJ Coon
Proceedings of the National Academy of Sciences 106 (4), 995-1000, 2009
2232009
Phosphoproteomics for the masses
PA Grimsrud, DL Swaney, CD Wenger, NA Beauchene, JJ Coon
ACS chemical biology 5 (1), 105-119, 2010
2092010
Chaperone-mediated autophagy prevents collapse of the neuronal metastable proteome
M Bourdenx, A Martín-Segura, A Scrivo, JA Rodriguez-Navarro, ...
Cell 184 (10), 2696-2714. e25, 2021
1972021
Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures
T Pekar Second, JD Blethrow, JC Schwartz, GE Merrihew, MJ MacCoss, ...
Analytical chemistry 81 (18), 7757-7765, 2009
1922009
A proteomics grade electron transfer dissociation-enabled hybrid linear ion trap-orbitrap mass spectrometer
GC McAlister, WT Berggren, J Griep-Raming, S Horning, A Makarov, ...
Journal of proteome research 7 (8), 3127-3136, 2008
1632008
Tau interactome maps synaptic and mitochondrial processes associated with neurodegeneration
TE Tracy, J Madero-Pérez, DL Swaney, TS Chang, M Moritz, C Konrad, ...
Cell 185 (4), 712-728. e14, 2022
1502022
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