Daniel Maticzka
Daniel Maticzka
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Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
DHX9 suppresses RNA processing defects originating from the Alu invasion of the human genome
T Aktaş, İ Avşar Ilık, D Maticzka, V Bhardwaj, C Pessoa Rodrigues, ...
Nature 544 (7648), 115-119, 2017
GraphProt: modeling binding preferences of RNA-binding proteins
D Maticzka, SJ Lange, F Costa, R Backofen
Genome biology 15, 1-18, 2014
Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila
IA Ilik, JJ Quinn, P Georgiev, F Tavares-Cadete, D Maticzka, S Toscano, ...
Molecular cell 51 (2), 156-173, 2013
Global or local? Predicting secondary structure and accessibility in mRNAs
SJ Lange, D Maticzka, M Möhl, JN Gagnon, CM Brown, R Backofen
Nucleic Acids Research, 2012
Characterization of CRISPR RNA processing in Clostridium thermocellum and Methanococcus maripaludis
H Richter, J Zoephel, J Schermuly, D Maticzka, R Backofen, L Randau
Nucleic Acids Research, 2012
Lineage-specific splicing of a brain-enriched alternative exon promotes glioblastoma progression
R Ferrarese, GR Harsh, AK Yadav, E Bug, D Maticzka, W Reichardt, ...
The Journal of clinical investigation 124 (7), 2861-2876, 2014
In vitro iCLIP-based modeling uncovers how the splicing factor U2AF2 relies on regulation by cofactors
FXR Sutandy, S Ebersberger, L Huang, A Busch, M Bach, HS Kang, ...
Genome research 28 (5), 699-713, 2018
The RNA-binding protein ARPP21 controls dendritic branching by functionally opposing the miRNA it hosts
F Rehfeld, D Maticzka, S Grosser, P Knauff, M Eravci, I Vida, R Backofen, ...
Nature communications 9 (1), 1235, 2018
Chemotherapy-induced transposable elements activate MDA5 to enhance haematopoietic regeneration
T Clapes, A Polyzou, P Prater, Sagar, A Morales-Hernández, MG Ferrarini, ...
Nature cell biology 23 (7), 704-717, 2021
uvCLAP is a fast and non-radioactive method to identify in vivo targets of RNA-binding proteins
D Maticzka, IA Ilik, T Aktas, R Backofen, A Akhtar
Nature communications 9 (1), 1142, 2018
A mutually exclusive stem–loop arrangement in roX2 RNA is essential for X-chromosome regulation in Drosophila
IA Ilik, D Maticzka, P Georgiev, NM Gutierrez, R Backofen, A Akhtar
Genes & development 31 (19), 1973-1987, 2017
Classifying proteinlike sequences in arbitrary lattice protein models using LatPack
M Mann, D Maticzka, R Saunders, R Backofen
HFSP journal 2 (6), 396-404, 2008
FLASH: ultra-fast protocol to identify RNA–protein interactions in cells
IA Ilik, T Aktas, D Maticzka, R Backofen, A Akhtar
Nucleic Acids Research 48 (3), e15-e15, 2020
SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins
M Preusse, C Marr, S Saunders, D Maticzka, H Lickert, R Backofen, ...
RNA biology 12 (9), 998-1009, 2015
Nephronophthisis gene products display RNA-binding properties and are recruited to stress granules
L Estrada Mallarino, C Engel, İA Ilık, D Maticzka, F Heyl, B Müller, ...
Scientific Reports 10 (1), 15954, 2020
Galaxy CLIP-Explorer: a web server for CLIP-Seq data analysis
F Heyl, D Maticzka, M Uhl, R Backofen
Gigascience 9 (11), giaa108, 2020
Bioconda: A sustainable and comprehensive software distribution for the life sciences. bioRxiv. 2017
R Dale, B Grüning, A Sjödin
Publisher Full Text, 0
Heterogenous nuclear ribonucleoprotein D-like controls endothelial cell functions
S Fischer, C Lichtenthaeler, A Stepanenko, F Heyl, D Maticzka, ...
Biological Chemistry 405 (4), 229-239, 2024
CLIP-Seq data analysis from pre-processing to motif detection
F Heyl, D Maticzka, B Batut
Galaxy Training Network, 2023
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