Geir Kjetil Sandve
Geir Kjetil Sandve
Professor, bioinformatics, University of Oslo
Verified email at
Cited by
Cited by
Ten simple rules for reproducible computational research
GK Sandve, A Nekrutenko, J Taylor, E Hovig
PLoS computational biology 9 (10), e1003285, 2013
A survey of motif discovery methods in an integrated framework
GK Sandve, F Drabløs
Biology direct 1 (1), 1-16, 2006
Hopfield networks is all you need
H Ramsauer, B Schäfl, J Lehner, P Seidl, M Widrich, T Adler, L Gruber, ...
arXiv preprint arXiv:2008.02217, 2020
In the loop: promoter–enhancer interactions and bioinformatics
A Mora, GK Sandve, OS Gabrielsen, R Eskeland
Briefings in bioinformatics 17 (6), 980-995, 2016
The Genomic HyperBrowser: inferential genomics at the sequence level
GK Sandve, S Gundersen, H Rydbeck, IK Glad, L Holden, M Holden, ...
Genome biology 11 (12), 1-12, 2010
Improved benchmarks for computational motif discovery
GK Sandve, O Abul, V Walseng, F Drabløs
BMC bioinformatics 8 (1), 1-13, 2007
Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease
LF Risnes, A Christophersen, S Dahal-Koirala, RS Neumann, GK Sandve, ...
The Journal of clinical investigation 128 (6), 2642-2650, 2018
Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease
AE Handel, GK Sandve, G Disanto, AJ Berlanga-Taylor, G Gallone, ...
BMC medicine 11 (1), 1-11, 2013
Assessment of composite motif discovery methods
K Klepper, GK Sandve, O Abul, J Johansen, F Drablos
BMC bioinformatics 9 (1), 1-16, 2008
A map of direct TF–DNA interactions in the human genome
M Gheorghe, GK Sandve, A Khan, J Chèneby, B Ballester, A Mathelier
Nucleic acids research 47 (4), e21-e21, 2019
Uracil accumulation and mutagenesis dominated by cytosine deamination in CpG dinucleotides in mice lacking UNG and SMUG1
L Alsøe, A Sarno, S Carracedo, D Domanska, F Dingler, L Lirussi, ...
Scientific reports 7 (1), 1-14, 2017
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ...
Cell Reports 34 (11), 108856, 2021
Vitamin D receptor binding, chromatin states and association with multiple sclerosis
G Disanto, GK Sandve, AJ Berlanga-Taylor, G Ragnedda, JM Morahan, ...
Human molecular genetics 21 (16), 3575-3586, 2012
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization
J Paulsen, GK Sandve, S Gundersen, TG Lien, K Trengereid, E Hovig
Bioinformatics 30 (11), 1620-1622, 2014
The Genomic HyperBrowser: an analysis web server for genome-scale data
GK Sandve, S Gundersen, M Johansen, IK Glad, K Gunathasan, L Holden, ...
Nucleic acids research 41 (W1), W133-W141, 2013
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires
AJ Brown, I Snapkov, R Akbar, M Pavlović, E Miho, GK Sandve, V Greiff
Molecular Systems Design & Engineering 4 (4), 701-736, 2019
EBNA2 binds to genomic intervals associated with multiple sclerosis and overlaps with vitamin D receptor occupancy
VAG Ricigliano, AE Handel, GK Sandve, V Annibali, G Ristori, R Mechelli, ...
PLoS One 10 (4), e0119605, 2015
Identifying elemental genomic track types and representing them uniformly
S Gundersen, M Kalaš, O Abul, A Frigessi, E Hovig, GK Sandve
BMC bioinformatics 12 (1), 1-17, 2011
Modern hopfield networks and attention for immune repertoire classification
M Widrich, B Schäfl, M Pavlović, H Ramsauer, L Gruber, M Holzleitner, ...
Advances in Neural Information Processing Systems 33, 18832-18845, 2020
High-throughput single-cell analysis of B cell receptor usage among autoantigen-specific plasma cells in celiac disease
B Roy, RS Neumann, O Snir, R Iversen, GK Sandve, KEA Lundin, ...
The Journal of Immunology 199 (2), 782-791, 2017
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