Patric Jern
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Analyses of pig genomes provide insight into porcine demography and evolution
MAM Groenen, AL Archibald, H Uenishi, CK Tuggle, Y Takeuchi, ...
Nature 491 (7424), 393-398, 2012
Endogenous non-retroviral RNA virus elements in mammalian genomes
M Horie, T Honda, Y Suzuki, Y Kobayashi, T Daito, T Oshida, K Ikuta, ...
Nature 463 (7277), 84-87, 2010
Strong signatures of selection in the domestic pig genome
CJ Rubin, HJ Megens, AM Barrio, K Maqbool, S Sayyab, D Schwochow, ...
Proceedings of the National Academy of Sciences 109 (48), 19529-19536, 2012
Effects of retroviruses on host genome function
P Jern, JM Coffin
Annual review of genetics 42, 709-732, 2008
Use of endogenous retroviral sequences (ERVs) and structural markers for retroviral phylogenetic inference and taxonomy
P Jern, GO Sperber, J Blomberg
Retrovirology 2, 1-12, 2005
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing
A Martinez Barrio, S Lamichhaney, G Fan, N Rafati, M Pettersson, ...
elife 5, e12081, 2016
Likely role of APOBEC3G-mediated G-to-A mutations in HIV-1 evolution and drug resistance
P Jern, RA Russell, VK Pathak, JM Coffin
PLoS pathogens 5 (4), e1000367, 2009
Automated recognition of retroviral sequences in genomic data—RetroTector©
GO Sperber, T Airola, P Jern, J Blomberg
Nucleic acids research 35 (15), 4964-4976, 2007
Pan-vertebrate comparative genomics unmasks retrovirus macroevolution
A Hayward, CK Cornwallis, P Jern
Proceedings of the National Academy of Sciences 112 (2), 464-469, 2015
Role of APOBEC3 in genetic diversity among endogenous murine leukemia viruses
P Jern, JP Stoye, JM Coffin
PLoS genetics 3 (10), e183, 2007
TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells
L Fasching, A Kapopoulou, R Sachdeva, R Petri, ME Jönsson, C Männe, ...
Cell reports 10 (1), 20-28, 2015
Broad-scale phylogenomics provides insights into retrovirus–host evolution
A Hayward, M Grabherr, P Jern
Proceedings of the National Academy of Sciences 110 (50), 20146-20151, 2013
TRIM28 controls a gene regulatory network based on endogenous retroviruses in human neural progenitor cells
PL Brattås, ME Jönsson, L Fasching, JN Wahlestedt, M Shahsavani, ...
Cell reports 18 (1), 1-11, 2017
Unsupervised genome-wide recognition of local relationship patterns
N Zamani, P Russell, H Lantz, MP Hoeppner, JRS Meadows, N Vijay, ...
BMC genomics 14, 1-11, 2013
Definition and variation of human endogenous retrovirus H
P Jern, GO Sperber, J Blomberg
Virology 327 (1), 93-110, 2004
Sequence variability, gene structure, and expression of full-length human endogenous retrovirus H
P Jern, GO Sperber, G Ahlsén, J Blomberg
Journal of virology 79 (10), 6325-6337, 2005
ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions
A Hayward, A Ghazal, G Andersson, L Andersson, P Jern
PloS one 8 (3), e59940, 2013
The avian W chromosome is a refugium for endogenous retroviruses with likely effects on female-biased mutational load and genetic incompatibilities
V Peona, OM Palacios-Gimenez, J Blommaert, J Liu, T Haryoko, ...
Philosophical Transactions of the Royal Society B 376 (1833), 20200186, 2021
Evolutionary conservation of orthoretroviral long terminal repeats (LTRs) and ab initio detection of single LTRs in genomic data
F Benachenhou, P Jern, M Oja, G Sperber, V Blikstad, P Somervuo, ...
PloS one 4 (4), e5179, 2009
Development of broadly targeted human endogenous gammaretroviral pol-based real time PCRs: quantitation of RNA expression in human tissues
A Forsman, Z Yun, L Hu, D Uzhameckis, P Jern, J Blomberg
Journal of virological methods 129 (1), 16-30, 2005
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