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Marius van den Beek
Marius van den Beek
Sci-Scale
Verified email at sci-scale.net - Homepage
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Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
58422018
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
8302018
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
4322020
Practical computational reproducibility in the life sciences
B Grüning, J Chilton, J Köster, R Dale, N Soranzo, M van den Beek, ...
Cell systems 6 (6), 631-635, 2018
1362018
C ech M
E Afgan, D Baker, M Van Den Beek, D Blankenberg, D Bouvier
Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman …, 2016
532016
Paramutation in Drosophila Requires Both Nuclear and Cytoplasmic Actors of the piRNA Pathway and Induces Cis-spreading of piRNA Production
C Hermant, A Boivin, L Teysset, V Delmarre, A Asif-Laidin, ...
Genetics 201 (4), 1381-1396, 2015
442015
RNA-seq data analysis in Galaxy
B Batut, M van den Beek, MA Doyle, N Soranzo
RNA Bioinformatics, 367-392, 2021
342021
Grü ning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. 2016
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Cˇech, ...
The Galaxy platform for accessible, reproducible and collaborative …, 2016
342016
Unraveling the features of somatic transposition in the Drosophila intestine
K Siudeja, M van Den Beek, N Riddiford, B Boumard, A Wurmser, ...
The EMBO Journal 40 (9), e106388, 2021
332021
Identification of Viral Suppressors of RNAi by a Reporter Assay in Drosophila S2 Cell Culture
KWR van Cleef, JT van Mierlo, M van den Beek, RP van Rij
Antiviral RNAi: Concepts, Methods, and Applications, 201-213, 2011
332011
Stem cell proliferation is kept in check by the chromatin regulators Kismet/CHD7/CHD8 and Trr/MLL3/4
L Gervais, M van den Beek, M Josserand, J Sallé, M Stefanutti, ...
Developmental cell 49 (4), 556-573. e6, 2019
322019
NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy
W de Koning, M Miladi, S Hiltemann, A Heikema, JP Hays, S Flemming, ...
GigaScience 9 (10), giaa105, 2020
312020
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics
D Baker, M Van Den Beek, D Blankenberg, D Bouvier, J Chilton, N Coraor, ...
PLoS pathogens 16 (8), e1008643, 2020
262020
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
Nature biotechnology 39 (10), 1178-1179, 2021
212021
Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud
P Moreno, L Pireddu, P Roger, N Goonasekera, E Afgan, ...
BioRxiv, 488643, 2018
182018
Dual-layer transposon repression in heads of Drosophila melanogaster
M Van Den Beek, B Da Silva, J Pouch, C Carré, C Antoniewski
RNA 24 (12), 1749-1760, 2018
162018
Evolution and genomic signatures of spontaneous somatic mutation in Drosophila intestinal stem cells
N Riddiford, K Siudeja, M van den Beek, B Boumard, AJ Bardin
Genome Research 31 (8), 1419-1432, 2021
142021
Metavisitor, a suite of galaxy tools for simple and rapid detection and discovery of viruses in deep sequence data
G Carissimo, M van den Beek, KD Vernick, C Antoniewski
PLoS One 12 (1), e0168397, 2017
122017
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring
W Maier, S Bray, M van den Beek, D Bouvier, N Coraor, M Miladi, B Singh, ...
BioRxiv, 2021
102021
ReGaTE: registration of galaxy tools in elixir
O Doppelt-Azeroual, F Mareuil, E Deveaud, M Kalaš, N Soranzo, ...
GigaScience 6 (6), gix022, 2017
92017
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