Follow
Ricardo Roberto da Silva
Title
Cited by
Cited by
Year
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
136882019
Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking
M Wang, JJ Carver, VV Phelan, LM Sanchez, N Garg, Y Peng, ...
Nature biotechnology 34 (8), 828-837, 2016
32902016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9292018
Feature-based molecular networking in the GNPS analysis environment
LF Nothias, D Petras, R Schmid, K Dührkop, J Rainer, A Sarvepalli, ...
Nature methods 17 (9), 905-908, 2020
8282020
American gut: an open platform for citizen science microbiome research
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018
6612018
Illuminating the dark matter in metabolomics
RR Silva, PC Dorrestein, RA Quinn
Proceedings of the National Academy of Sciences of the United States of America, 2015
4782015
Global chemical effects of the microbiome include new bile-acid conjugations
RA Quinn, AV Melnik, A Vrbanac, T Fu, KA Patras, MP Christy, Z Bodai, ...
Nature 579 (7797), 123-129, 2020
3802020
Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation
LF Nothias, M Nothias-Esposito, R da Silva, M Wang, I Protsyuk, Z Zhang, ...
J. Nat. Prod., 2018
3082018
Propagating annotations of molecular networks using in silico fragmentation
RR da Silva, M Wang, LF Nothias, JJJ van der Hooft, ...
PLoS Comput Biol, 2018
2972018
Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing
M Ernst, DB Silva, RR Silva, RZN Vêncio, NP Lopes
Natural product reports 31 (6), 784-806, 2014
2182014
Global chemical analysis of biology by mass spectrometry
AA Aksenov, R da Silva, R Knight, NP Lopes, PC Dorrestein
Nature Reviews Chemistry 1 (7), 0054, 2017
1992017
Mass spectrometry searches using MASST
M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ...
Nature biotechnology 38 (1), 23-26, 2020
1862020
The impact of skin care products on skin chemistry and microbiome dynamics
BMC Biology, 2019
1602019
Prioritizing Natural Product Diversity in a Collection of 146 Bacterial Strains Based on Growth and Extraction Protocols
M Crüsemann, EC O’Neill, CB Larson, AV Melnik, DJ Floros, RR da Silva, ...
Journal of Natural Products, 2016
1272016
High-resolution liquid chromatography tandem mass spectrometry enables large scale molecular characterization of dissolved organic matter
D Petras, I Koester, R Da Silva, BM Stephens, AF Haas, CE Nelson, ...
Frontiers in Marine Science 4, 405, 2017
1112017
Three-Dimensional Microbiome and Metabolome Cartography of a Diseased Human Lung
Cell Host & Microbe, 2017
1102017
Convergent evolution of pain-inducing defensive venom components in spitting cobras
Science, 2021
1082021
Coupling targeted and untargeted mass spectrometry for metabolome-microbiome-wide association studies of human fecal samples
AV Melnik, RR da Silva, ER Hyde, AA Aksenov, F Vargas, A Bouslimani, ...
Analytical Chemistry, 2017
842017
Lifestyle chemistries from phones for individual profiling
A Bouslimania, AV Melnik, Z Xu, A Amir, RR da Silva, M Wang, ...
Proceedings of the National Academy of Sciences, 2016
712016
Comprehensive mass spectrometry‐guided phenotyping of plant specialized metabolites reveals metabolic diversity in the cosmopolitan plant family Rhamnaceae
KB Kang, M Ernst, JJJ van der Hooft, RR da Silva, J Park, MH Medema, ...
The Plant Journal 98 (6), 1134-1144, 2019
692019
The system can't perform the operation now. Try again later.
Articles 1–20