| Package ‘ape’ E Paradis, S Blomberg, B Bolker, J Brown, J Claude, HS Cuong, ... Analyses of phylogenetics and evolution, version 2 (4), 47, 2019 | 180 | 2019 |
| GeneANOVA—gene expression analysis of variance G Didier, P Brézellec, E Remy, A Hénaut Bioinformatics 18 (3), 490-491, 2002 | 125 | 2002 |
| Identifying communities from multiplex biological networks G Didier, C Brun, A Baudot PeerJ 3, e1525, 2015 | 73 | 2015 |
| The reconstructed evolutionary process with the fossil record G Didier, M Royer-Carenzi, M Laurin Journal of Theoretical Biology 315, 26-37, 2012 | 65 | 2012 |
| Common intervals of two sequences G Didier International Workshop on Algorithms in Bioinformatics, 17-24, 2003 | 57 | 2003 |
| Mapping multivalued onto Boolean dynamics G Didier, E Remy, C Chaouiya Journal of theoretical biology 270 (1), 177-184, 2011 | 56 | 2011 |
| Choosing the best ancestral character state reconstruction method M Royer-Carenzi, P Pontarotti, G Didier Mathematical Biosciences 242 (1), 95-109, 2013 | 45 | 2013 |
| Character sets of strings G Didier, T Schmidt, J Stoye, D Tsur Journal of Discrete Algorithms 5 (2), 330-340, 2007 | 45 | 2007 |
| The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA AS Carpentier, A Riva, P Tisseur, G Didier, A Hénaut Computational biology and chemistry 28 (1), 3-10, 2004 | 41 | 2004 |
| Likelihood of tree topologies with fossils and diversification rate estimation G Didier, M Fau, M Laurin Systematic Biology 66 (6), 964-987, 2017 | 40 | 2017 |
| TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database F Lopez, J Textoris, A Bergon, G Didier, E Remy, S Granjeaud, J Imbert, ... PLoS One 3 (12), e4001, 2008 | 39 | 2008 |
| Exact distribution of divergence times from fossil ages and tree topologies G Didier, M Laurin Systematic Biology 69 (6), 1068-1087, 2020 | 35* | 2020 |
| Relations between gene regulatory networks and cell dynamics in Boolean models G Didier, E Remy Discrete Applied Mathematics 160 (15), 2147-2157, 2012 | 32 | 2012 |
| Caractérisation des N-écritures et application à l'étude des suites de complexité ultimement n+ cste G Didier Theoretical computer science 215 (1-2), 31-49, 1999 | 31 | 1999 |
| Open community challenge reveals molecular network modules with key roles in diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... bioRxiv, 265553, 2018 | 28 | 2018 |
| Ape: analyses of phylogenetics and evolution. R Package, Version 5.2 E Paradis, S Blomberg, B Bolker, J Brown, S Claramunt, J Claude, ... | 28 | 2018 |
| Package ‘ape’. Analyses of phylogenetics and evolution, version, 2, 4–1 E Paradis, S Blomberg, B Bolker, J Brown, J Claude, HS Cuong, ... | 24 | 2015 |
| A comparison of ancestral state reconstruction methods for quantitative characters M Royer-Carenzi, G Didier Journal of Theoretical Biology 404, 126-142, 2016 | 23 | 2016 |
| Codages de rotations et fractions continues G Didier Journal of Number Theory 71 (2), 275-306, 1998 | 23 | 1998 |
| Identifying communities from multiplex biological networks by randomized optimization of modularity G Didier, A Valdeolivas, A Baudot F1000Research 7, 2018 | 22 | 2018 |
