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Min-Yeh (Victor) Tsai
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Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics
RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ...
Nucleic acids research 44 (W1), W356-W360, 2016
2022016
Exploring the aggregation free energy landscape of the amyloid-β protein (1–40)
W Zheng, MY Tsai, M Chen, PG Wolynes
Proceedings of the National Academy of Sciences 113 (42), 11835-11840, 2016
1312016
Comparing the aggregation free energy landscapes of amyloid beta (1–42) and amyloid beta (1–40)
W Zheng, MY Tsai, PG Wolynes
Journal of the American Chemical Society 139 (46), 16666-16676, 2017
1022017
Electrostatics, structure prediction, and the energy landscapes for protein folding and binding
MY Tsai, W Zheng, D Balamurugan, NP Schafer, BL Kim, MS Cheung, ...
Protein Science 25 (1), 255-269, 2016
912016
Molecular mechanism of facilitated dissociation of Fis protein from DNA
MY Tsai, B Zhang, W Zheng, PG Wolynes
Journal of the American Chemical Society 138 (41), 13497-13500, 2016
532016
The aggregation free energy landscapes of polyglutamine repeats
M Chen, MY Tsai, W Zheng, PG Wolynes
Journal of the American Chemical Society 138 (46), 15197-15203, 2016
412016
PAGE4 and conformational switching: Insights from molecular dynamics simulations and implications for prostate cancer
X Lin, S Roy, MK Jolly, F Bocci, NP Schafer, MY Tsai, Y Chen, Y He, ...
Journal of molecular biology 430 (16), 2422-2438, 2018
382018
AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes
S Jin, VG Contessoto, M Chen, NP Schafer, W Lu, X Chen, C Bueno, ...
Nucleic acids research 48 (W1), W25-W30, 2020
252020
Structural and dynamical order of a disordered protein: molecular insights into conformational switching of PAGE4 at the systems level
X Lin, P Kulkarni, F Bocci, NP Schafer, S Roy, MY Tsai, Y He, Y Chen, ...
Biomolecules 9 (2), 77, 2019
232019
Multiple binding configurations of Fis protein pairs on DNA: Facilitated dissociation versus cooperative dissociation
MY Tsai, W Zheng, M Chen, PG Wolynes
Journal of the American Chemical Society 141 (45), 18113-18126, 2019
142019
Theoretical Study on Structure and Sum-Frequency Generation (SFG) Spectroscopy of Styrene–Graphene Adsorption System
CK Lin, CC Shih, Y Niu, MY Tsai, YJ Shiu, C Zhu, M Hayashi, SH Lin
The Journal of Physical Chemistry C 117 (4), 1754-1760, 2013
142013
Modeling protein aggregation kinetics: the method of second stochasticization
JL Shen, MY Tsai, NP Schafer, PG Wolynes
The Journal of Physical Chemistry B 125 (4), 1118-1133, 2021
122021
The role of charge density coupled DNA bending in transcription factor sequence binding specificity: a generic mechanism for indirect readout
X Chen, MY Tsai, PG Wolynes
Journal of the American Chemical Society 144 (4), 1835-1845, 2022
112022
Molecular dynamics insight into the role of tertiary (foldon) interactions on unfolding in cytochrome c
MY Tsai, AN Morozov, KY Chu, SH Lin
Chemical Physics Letters 475 (1-3), 111-115, 2009
112009
Nonadditive interactions in protein folding: the Zipper model of cytochrome c
AN Morozov, YJ Shiu, CT Liang, MY Tsai, SH Lin
Journal of Biological Physics 33 (4), 255-270, 2007
92007
Thermodynamic insight into protein aggregation using a kinetic ising model
MY Tsai, JM Yuan, SH Lin
Journal of the Chinese Chemical Society 62 (1), 21-25, 2015
62015
Thermodynamics of protein folding using a modified Wako-Saitô-Muñoz-Eaton model
MY Tsai, JM Yuan, Y Teranishi, SH Lin
Journal of Biological Physics 38 (4), 543-571, 2012
62012
Exploring the folding energy landscapes of heme proteins using a hybrid AWSEM-heme model
X Chen, W Lu, MY Tsai, S Jin, PG Wolynes
Journal of Biological Physics, 1-17, 2022
52022
Fibril Surface-Dependent Amyloid Precursors Revealed by Coarse-Grained Molecular Dynamics Simulation
YW Ma, TY Lin, MY Tsai
Frontiers in Molecular Biosciences 8, 719320, 2021
52021
Early-Stage Oligomerization of Prion-like Polypeptides Reveals the Molecular Mechanism of Amyloid-Disrupting Capacity by Proline Residues
TY Lin, YW Ma, MY Tsai
The Journal of Physical Chemistry B 127 (5), 1074-1088, 2023
22023
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