| De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013 | 6724 | 2013 |
| Systems survey of endocytosis by multiparametric image analysis C Collinet, M Stöter, CR Bradshaw, N Samusik, JC Rink, D Kenski, ... Nature 464 (7286), 243-249, 2010 | 460 | 2010 |
| Analysis of virtualization technologies for high performance computing environments AJ Younge, R Henschel, JT Brown, G Von Laszewski, J Qiu, GC Fox 2011 IEEE 4th International Conference on Cloud Computing, 9-16, 2011 | 334 | 2011 |
| SPEC OMP2012—an application benchmark suite for parallel systems using OpenMP MS Müller, J Baron, WC Brantley, H Feng, D Hackenberg, R Henschel, ... OpenMP in a Heterogeneous World: 8th International Workshop on OpenMP, IWOMP …, 2012 | 96 | 2012 |
| SPEC ACCEL: A standard application suite for measuring hardware accelerator performance G Juckeland, W Brantley, S Chandrasekaran, B Chapman, S Che, ... High Performance Computing Systems. Performance Modeling, Benchmarking, and …, 2015 | 78 | 2015 |
| Trinity RNA-Seq assembler performance optimization R Henschel, M Lieber, LS Wu, PM Nista, BJ Haas, RD LeDuc Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012 | 75 | 2012 |
| The open diffusion data derivatives, brain data upcycling via integrated publishing of derivatives and reproducible open cloud services P Avesani, B McPherson, S Hayashi, CF Caiafa, R Henschel, ... Scientific data 6 (1), 69, 2019 | 73 | 2019 |
| Demonstrating Lustre over a 100Gbps wide area network of 3,500 km R Henschel, S Simms, D Hancock, S Michael, T Johnson, N Heald, ... SC'12: Proceedings of the International Conference on High Performance …, 2012 | 27 | 2012 |
| Benchmarking harp-daal: High performance hadoop on knl clusters L Chen, B Peng, B Zhang, T Liu, Y Zou, L Jiang, R Henschel, C Stewart, ... 2017 IEEE 10th International Conference on Cloud Computing (CLOUD), 82-89, 2017 | 23 | 2017 |
| From describing to prescribing parallelism: Translating the SPEC ACCEL OpenACC suite to OpenMP target directives G Juckeland, O Hernandez, AC Jacob, D Neilson, VGV Larrea, S Wienke, ... High Performance Computing: ISC High Performance 2016 International …, 2016 | 20 | 2016 |
| ODI-Portal, Pipeline, and Archive (ODI-PPA): a web-based astronomical compute archive, visualization, and analysis service A Gopu, S Hayashi, MD Young, DR Harbeck, T Boroson, W Liu, R Kotulla, ... Software and Cyberinfrastructure for Astronomy III 9152, 120-139, 2014 | 19 | 2014 |
| Comparison of multi-sample variant calling methods for whole genome sequencing K Nho, JD West, H Li, R Henschel, MC Tavares, A Bharthur, MW Weiner, ... 2014 8th International Conference on Systems Biology (ISB), 59-62, 2014 | 18 | 2014 |
| HarpLDA+: Optimizing latent dirichlet allocation for parallel efficiency B Peng, B Zhang, L Chen, M Avram, R Henschel, C Stewart, S Zhu, ... 2017 IEEE International Conference on Big Data (Big Data), 243-252, 2017 | 12 | 2017 |
| Hpchadoop: A framework to run hadoop on cray x-series supercomputers S Michael, A Thota, R Henschel Cray USer Group (CUG), 2014 | 11 | 2014 |
| Performance and quality of service of data and video movement over a 100 Gbps testbed M Kluge, S Simms, T William, R Henschel, A Georgi, C Meyer, MS Mueller, ... Future Generation Computer Systems 29 (1), 230-240, 2013 | 9 | 2013 |
| Exploiting hpc resources for the 3d-time series analysis of caries lesion activity H Zhang, H Li, MJ Boyles, R Henschel, EK Kohara, M Ando Proceedings of the 1st Conference of the Extreme Science and Engineering …, 2012 | 9 | 2012 |
| An archive of spectra from the Mayall Fourier transform spectrometer at Kitt Peak CA Pilachowski, KH Hinkle, MD Young, HB Dennis, A Gopu, R Henschel, ... Publications of the Astronomical Society of the Pacific 129 (972), 024006, 2017 | 7 | 2017 |
| A PetaFLOPS Supercomputer as a Campus Resource: Innovation, Impact, and Models for Locally-Owned High Performance Computing at Research Colleges and Universities AS Thota, B Fulton, LMW Weakley, R Henschel, DY Hancock, M Allen, ... Proceedings of the 2016 ACM SIGUCCS Annual Conference, 61-68, 2016 | 7 | 2016 |
| Performance optimization for the trinity RNA-Seq assembler M Wagner, B Fulton, R Henschel Tools for High Performance Computing 2015: Proceedings of the 9th …, 2016 | 7 | 2016 |
| Experiences porting a molecular dynamics code to gpus on a cray xk7 DK Berry, J Schuchart, R Henschel Cray User Group, 2013 | 7 | 2013 |
