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Daniel Blankenberg
Daniel Blankenberg
Genomic Medicine Institute - Lerner Research Institute - Cleveland Clinic / Galaxy Project
Verified email at ccf.org - Homepage
Title
Cited by
Cited by
Year
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
36212018
Galaxy: a platform for interactive large-scale genome analysis
B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ...
Genome research 15 (10), 1451-1455, 2005
25742005
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update
E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ...
Nucleic acids research 44 (W1), W3-W10, 2016
20552016
Galaxy: a web‐based genome analysis tool for experimentalists
D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ...
Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010
18422010
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475-476, 2018
8112018
Manipulation of FASTQ data with Galaxy
D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ...
Bioinformatics 26 (14), 1783-1785, 2010
7962010
An encyclopedia of mouse DNA elements (Mouse ENCODE)
JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ...
Genome biology 13 (8), 418, 2012
4882012
Community-led, integrated, reproducible multi-omics with anvi’o
AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ...
Nature Microbiology 6 (1), 3-6, 2021
439*2021
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update
V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ...
Nucleic acids research 48 (W1), W395-W402, 2020
4292020
Cloudmap: a cloud-based pipeline for analysis of mutant genome sequences
G Minevich, DS Park, D Blankenberg, RJ Poole, O Hobert
Genetics 192 (4), 1249-1269, 2012
3342012
28-way vertebrate alignment and conservation track in the UCSC Genome Browser
W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ...
Genome research 17 (12), 1797-1808, 2007
3172007
Dissemination of scientific software with Galaxy ToolShed
D Blankenberg, G Von Kuster, E Bouvier, D Baker, E Afgan, N Stoler, ...
Genome biology 15, 1-3, 2014
2652014
Maternal age effect and severe germ-line bottleneck in the inheritance of human mitochondrial DNA
B Rebolledo-Jaramillo, MSW Su, N Stoler, JA McElhoe, B Dickins, ...
Proceedings of the National Academy of Sciences 111 (43), 15474-15479, 2014
2502014
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update
Nucleic Acids Research 50 (W1), W345-W351, 2022
2332022
A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly
D Blankenberg, J Taylor, I Schenck, J He, Y Zhang, M Ghent, ...
Genome research 17 (6), 960-964, 2007
1692007
Using galaxy to perform large‐scale interactive data analyses
J Taylor, I Schenck, D Blankenberg, A Nekrutenko
Current protocols in bioinformatics 19 (1), 10.5. 1-10.5. 25, 2007
1632007
Quantitative sequence-function relationships in proteins based on gene ontology
V Sangar, DJ Blankenberg, N Altman, AM Lesk
BMC bioinformatics 8, 1-15, 2007
1042007
Integrating diverse databases into an unified analysis framework: a Galaxy approach
D Blankenberg, N Coraor, G Von Kuster, J Taylor, A Nekrutenko
Database 2011, bar011, 2011
682011
Using galaxy to perform large‐scale interactive data analyses
J Hillman‐Jackson, D Clements, D Blankenberg, J Taylor, A Nekrutenko, ...
Current protocols in bioinformatics 38 (1), 10.5. 1-10.5. 47, 2012
652012
Child weight gain trajectories linked to oral microbiota composition
SJC Craig, D Blankenberg, ACL Parodi, IM Paul, LL Birch, JS Savage, ...
Scientific reports 8 (1), 14030, 2018
642018
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Articles 1–20