Michael R. Hoopmann
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Comet: An open‐source MS/MS sequence database search tool
JK Eng, TA Jahan, MR Hoopmann
Proteomics 13 (1), 22-24, 2013
Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome
U Kusebauch, DS Campbell, EW Deutsch, CS Chu, DA Spicer, ...
Cell 166 (3), 766-778, 2016
The 5300-year-old Helicobacter pylori genome of the Iceman
F Maixner, B Krause-Kyora, D Turaev, A Herbig, MR Hoopmann, ...
Science 351 (6269), 162-165, 2016
A Deeper Look into Comet—Implementation and Features
JK Eng, MR Hoopmann, TA Jahan, JD Egertson, WS Noble, MJ MacCoss
Journal of The American Society for Mass Spectrometry 26 (11), 1865-1874, 2015
High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry
MR Hoopmann, GL Finney, MJ MacCoss
Analytical chemistry 79 (15), 5620-5632, 2007
Kojak: efficient analysis of chemically cross-linked protein complexes
MR Hoopmann, A Zelter, RS Johnson, M Riffle, MJ MacCoss, TN Davis, ...
Journal of proteome research 14 (5), 2190-2198, 2015
Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry
M Bern, G Finney, MR Hoopmann, G Merrihew, MJ Toth, MJ MacCoss
Analytical chemistry 82 (3), 833-841, 2010
Comparison of database search strategies for high precursor mass accuracy MS/MS data
EJ Hsieh, MR Hoopmann, B MacLean, MJ MacCoss
Journal of proteome research 9 (2), 1138-1143, 2010
Crux: rapid open source protein tandem mass spectrometry analysis
S McIlwain, K Tamura, A Kertesz-Farkas, CE Grant, B Diament, B Frewen, ...
Journal of proteome research 13 (10), 4488-4491, 2014
The state of the human proteome in 2012 as viewed through PeptideAtlas
T Farrah, EW Deutsch, MR Hoopmann, JL Hallows, Z Sun, CY Huang, ...
Journal of proteome research 12 (1), 162-171, 2013
First community-wide, comparative cross-linking mass spectrometry study
C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ...
Analytical chemistry 91 (11), 6953-6961, 2019
Accurate peptide fragment mass analysis: multiplexed peptide identification and quantification
CR Weisbrod, JK Eng, MR Hoopmann, T Baker, JE Bruce
Journal of proteome research 11 (3), 1621-1632, 2012
Assessing the dynamic range and peak capacity of nanoflow LC− FAIMS− MS on an ion trap mass spectrometer for proteomics
JD Canterbury, X Yi, MR Hoopmann, MJ MacCoss
Analytical chemistry 80 (18), 6888-6897, 2008
Cross-linking measurements of in vivo protein complex topologies
C Zheng, L Yang, MR Hoopmann, JK Eng, X Tang, CR Weisbrod, ...
Molecular & Cellular Proteomics 10 (10), 2011
PTMProphet: Fast and accurate mass modification localization for the trans-proteomic pipeline
DD Shteynberg, EW Deutsch, DS Campbell, MR Hoopmann, ...
Journal of proteome research 18 (12), 4262-4272, 2019
Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks
H Roume, A Heintz-Buschart, EEL Muller, P May, VP Satagopam, ...
Npj Biofilms And Microbiomes 1, 2015
The fasted/fed mouse metabolic acetylome: N6-acetylation differences suggest acetylation coordinates organ-specific fuel switching
L Yang, B Vaitheesvaran, K Hartil, AJ Robinson, MR Hoopmann, JK Eng, ...
Journal of proteome research 10 (9), 4134-4149, 2011
Community-integrated omics links dominance of a microbial generalist to fine-tuned resource usage
EEL Muller, N Pinel, CC Laczny, MR Hoopmann, S Narayanasamy, ...
Nature communications 5 (1), 5603, 2014
Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data
GL Finney, AR Blackler, MR Hoopmann, JD Canterbury, CC Wu, ...
Analytical chemistry 80 (4), 961-971, 2008
Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling
MD Dean, GD Findlay, MR Hoopmann, CC Wu, MJ MacCoss, ...
BMC genomics 12, 1-13, 2011
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Articles 1–20