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Roberto Vera Alvarez, PhD
Roberto Vera Alvarez, PhD
National Center for Biotechnology Information
Verified email at ncbi.nlm.nih.gov - Homepage
Title
Cited by
Cited by
Year
COG database update: focus on microbial diversity, model organisms, and widespread pathogens
MY Galperin, YI Wolf, KS Makarova, R Vera Alvarez, D Landsman, ...
Nucleic Acids Research 49 (D1), D274-D281, 2021
4462021
BioContainers: An open-source and community-driven framework for software standardization
Bioinformatics, 10.1093/bioinformatics/btx192, 2017
239*2017
TPMCalculator: one-step software to quantify mRNA abundance of genomic features
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
1402019
TPMCalculator: one-step software to quantify mRNA abundance of genomic features
R Vera Alvarez, LS Pongor, L Marińo-Ramírez, D Landsman
Bioinformatics 35 (11), 1960-1962, 2019
1402019
MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions
N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez, A Goncearenco, ...
Iscience 23 (3), 2020
1022020
Census of solo LuxR genes in prokaryotic genomes
S Hudaiberdiev, KS Choudhary, R Vera Alvarez, Z Gelencsér, B Ligeti, ...
Frontiers in cellular and infection microbiology 5, 20, 2015
942015
ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes
I Dogsa, KS Choudhary, Z Marsetic, S Hudaiberdiev, R Vera, S Pongor, ...
PloS one 9 (5), e96122, 2014
502014
LitSense: making sense of biomedical literature at sentence level
A Allot, Q Chen, S Kim, R Vera Alvarez, DC Comeau, WJ Wilbur, Z Lu
Nucleic acids research 47 (W1), W594-W599, 2019
492019
Banana (Musa acuminata) transcriptome profiling in response to rhizobacteria: Bacillus amyloliquefaciens Bs006 and Pseudomonas fluorescens Ps006
RM Gamez, F Rodríguez, NM Vidal, S Ramirez, R Vera Alvarez, ...
BMC genomics 20 (1), 1-20, 2019
462019
In silico analysis of accurate proteomics, complemented by selective isolation of peptides
Y Perez-Riverol, A Sánchez, Y Ramos, A Schmidt, M Müller, L Betancourt, ...
Journal of proteomics 74 (10), 2071-2082, 2011
382011
BAMscale: quantification of next-generation sequencing peaks and generation of scaled coverage tracks
LS Pongor, JM Gross, R Vera Alvarez, J Murai, SM Jang, H Zhang, ...
Epigenetics & chromatin 13, 1-13, 2020
372020
Chemical compounds having antiviral activity against dengue virus and other flaviviruses
YM Reyes, GC Santiago, OG Cruz, RV Alvarez, VH Galindo, NF Salazar, ...
US Patent 8,722,742, 2014
272014
Chemical Compounds Having Antiviral Activity against Dengue Virus and Other Flaviviruses
Y MAZOLA REYES, G CHINEA SANTIAGO, O GUIROLA CRUZ, ...
WO Patent 2,009,106,019, 2009
27*2009
Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes
MY Galperin, N Yutin, YI Wolf, R Vera Alvarez, EV Koonin
Journal of Bacteriology 204 (6), e00079-22, 2022
252022
BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers
J Bai, C Bandla, J Guo, R Vera Alvarez, M Bai, JA Vizcaíno, P Moreno, ...
Journal of Proteome Research 20 (4), 2056-2061, 2021
212021
ElasticBLAST: accelerating sequence search via cloud computing
C Camacho, GM Boratyn, V Joukov, R Vera Alvarez, TL Madden
BMC bioinformatics 24 (1), 1-16, 2023
182023
JBioWH: an open-source Java framework for bioinformatics data integration
R Vera, Y Perez-Riverol, S Perez, B Ligeti, A Kertesz-Farkas, S Pongor
Database 2013, bat051, 2013
172013
Nonessential ribosomal proteins in bacteria and archaea identified using clusters of orthologous genes
MY Galperin, YI Wolf, SK Garushyants, R Vera Alvarez, EV Koonin
Journal of bacteriology 203 (11), 10.1128/jb. 00058-21, 2021
162021
Quantifying deleterious effects of regulatory variants
S Li, R Vera Alvarez, R Sharan, D Landsman, I Ovcharenko
Nucleic Acids Research, 1-8, 2016
162016
A Parallel Systematic-Monte Carlo Algorithm for Exploring Conformational Space
Y Perez-Riverol, R Vera, Y Mazola, A Musacchio
Current topics in medicinal chemistry 12 (16), 1790-1796, 2012
132012
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Articles 1–20