| Phased genome sequence of an interspecific hybrid flowering cherry, ‘Somei-Yoshino’ (Cerasus × yedoensis) K Shirasawa, T Esumi, H Hirakawa, H Tanaka, A Itai, A Ghelfi, H Nagasaki, ... DNA Research 26 (5), 379-389, 2019 | 50 | 2019 |
| Triportheus albus Cope, 1872 in the blackwater, clearwater, and whitewater of the Amazon: a case of phenotypic plasticity? JDA Araújo, A Ghelfi, AL Val Frontiers in genetics 8, 291916, 2017 | 23 | 2017 |
| Hayai-Annotation Plants: an ultra-fast and comprehensive functional gene annotation system in plants A Ghelfi, K Shirasawa, H Hirakawa, S Isobe Bioinformatics 35 (21), 4427, 2019 | 17 | 2019 |
| De novo whole-genome assembly in an interspecific hybrid table grape, ‘Shine Muscat’ K Shirasawa, H Hirakawa, A Azuma, F Taniguchi, T Yamamoto, A Sato, ... DNA Research 29 (6), dsac040, 2022 | 14 | 2022 |
| Genome sequence of Hydrangea macrophylla and its application in analysis of the double flower phenotype K Nashima, K Shirasawa, A Ghelfi, H Hirakawa, S Isobe, T Suyama, ... DNA Research 28 (1), dsaa026, 2021 | 14 | 2021 |
| Functional Categorization of Transcriptome in the Species Symphysodon aequifasciatus Pellegrin 1904 (Perciformes: Cichlidae) Exposed to Benzo[a]pyrene and … RSP Lemgruber, NAA Marshall, A Ghelfi, DB Fagundes, AL Val Plos one 8 (12), e81083, 2013 | 14 | 2013 |
| Genome features of common vetch (Vicia sativa) in natural habitats K Shirasawa, S Kosugi, K Sasaki, A Ghelfi, K Okazaki, A Toyoda, ... Plant Direct 5 (10), e352, 2021 | 13 | 2021 |
| An improved reference genome for Trifolium subterraneum L. provides insight into molecular diversity and intra-specific phylogeny K Shirasawa, R Moraga, A Ghelfi, H Hirakawa, H Nagasaki, K Ghamkhar, ... Frontiers in Plant Science 14, 1103857, 2023 | 5 | 2023 |
| Chromosome-scale genome assembly of Eustoma grandiflorum, the first complete genome sequence in the genus Eustoma K Shirasawa, R Arimoto, H Hirakawa, M Ishimori, A Ghelfi, M Miyasaka, ... G3 13 (2), jkac329, 2023 | 2 | 2023 |
| Hayai-Annotation Plants: an ultra-fast and comprehensive gene annotation system in plants A Ghelfi, K Shirasawa, H Hirakawa, S Isobe BioRxiv, 473488, 2018 | 2 | 2018 |
| A software tool for information management and data mining of biological data for studying adaptation of living organisms in amazonia PS Perez, AH Bevilacqua, A Ghelfi, AA Macedo, SR Nozawa, ... Proceedings of IEEE 1st International Conference on Computational Advances …, 2011 | 2 | 2011 |
| Plant GARDEN: a portal website for cross-searching between different types of genomic and genetic resources in a wide variety of plant species H Ichihara, M Yamada, M Kohara, H Hirakawa, A Ghelfi, T Tamura, ... BMC Plant Biology 23 (1), 391, 2023 | 1 | 2023 |
| Benchmarking Hayai-Annotation Plants: A Re-evaluation Using Standard Evaluation Metrics A Ghelfi, K Shirasawa, S Isobe bioRxiv, 2023.09. 08.556781, 2023 | | 2023 |
| Plant GARDEN: a portal website for accessing plant genome, DNA marker, and SNP information H Ichihara, H Hirakawa, A Ghelfi, M Kohara, M Yamada, T Tamura, ... IX International Scientific and Practical Conference on Biotechnology as an …, 2021 | | 2021 |
| KusakiDB v1. 0: a novel approach for validation and completeness of protein orthologous groups A Ghelfi, Y Nakamura, S Isobe bioRxiv, 2020.11. 09.373753, 2020 | | 2020 |
| Whole Genome Sequencing in Two Medical Plants, Atractylodes lancea and Ephedra sinica K Shirasawa, A Ghelfi, H Hiyama, T Tsusaka, H Hirakawa, S Isobe Plant and Animal Genome XXVII Conference (January 12-16, 2019), 2019 | | 2019 |
| Plant Genome Sequencing and Assembly with Long-Read Technology K Shirasawa, H Hirakawa, H Nagasaki, A Ghelfi, S Isobe PAG ASIA 2018, 2018 | | 2018 |
| Hayai-Annotation: An Ultra-Fast and Comprehensive Gene Annotation System in Plants A Ghelfi PAG ASIA 2018, 2018 | | 2018 |
| Triportheus albus Cope, 1872 in the Blackwater, Clearwater, and Whitewater of the Amazon: A Case of Phenotypic Plasticity? G Andrea, AL Val Volume 8, Pags. 0-0, 2017 | | 2017 |
| Identification of potential genes involved in the lower lip expansion of the Amazon fish tambaqui (Colossoma macropomum) exposed to hypoxia DB Fagundes, RSP Lemgruber, A Ghelfi, AL Val Livro de resumos do V Workshop INCT ADAPTA, pg. 68-68, 2014 | | 2014 |
