Lucy J. Colwell
Lucy J. Colwell
Cambridge University
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Cited by
Cited by
Rethinking attention with performers
K Choromanski, V Likhosherstov, D Dohan, X Song, A Gane, T Sarlos, ...
arXiv preprint arXiv:2009.14794, 2020
Protein 3D structure computed from evolutionary sequence variation
DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ...
PloS one 6 (12), e28766, 2011
InterPro in 2022
T Paysan-Lafosse, M Blum, S Chuguransky, T Grego, BL Pinto, ...
Nucleic acids research 51 (D1), D418-D427, 2023
Three-dimensional structures of membrane proteins from genomic sequencing
TA Hopf, LJ Colwell, R Sheridan, B Rost, C Sander, DS Marks
Cell 149 (7), 1607-1621, 2012
Using deep learning to annotate the protein universe
ML Bileschi, D Belanger, DH Bryant, T Sanderson, B Carter, D Sculley, ...
Nature Biotechnology 40 (6), 932-937, 2022
The interface of protein structure, protein biophysics, and molecular evolution
DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ...
Protein Science 21 (6), 769-785, 2012
Deep diversification of an AAV capsid protein by machine learning
DH Bryant, A Bashir, S Sinai, NK Jain, PJ Ogden, PF Riley, GM Church, ...
Nature Biotechnology 39 (6), 691-696, 2021
Comparative analysis of nanobody sequence and structure data
LS Mitchell, LJ Colwell
Proteins: Structure, Function, and Bioinformatics 86 (7), 697-706, 2018
Computational approaches to therapeutic antibody design: established methods and emerging trends
RA Norman, F Ambrosetti, AMJJ Bonvin, LJ Colwell, S Kelm, S Kumar, ...
Briefings in bioinformatics 21 (5), 1549-1567, 2020
Inferring interaction partners from protein sequences
AF Bitbol, RS Dwyer, LJ Colwell, NS Wingreen
Proceedings of the National Academy of Sciences 113 (43), 12180-12185, 2016
Model-based reinforcement learning for biological sequence design
C Angermueller, D Dohan, D Belanger, R Deshpande, K Murphy, ...
International conference on learning representations, 2019
Evaluating attribution for graph neural networks
B Sanchez-Lengeling, J Wei, B Lee, E Reif, P Wang, W Qian, ...
Advances in neural information processing systems 33, 5898-5910, 2020
A core subunit of Polycomb repressive complex 1 is broadly conserved in function but not primary sequence
LY Beh, LJ Colwell, NJ Francis
Proceedings of the National Academy of Sciences 109 (18), E1063-E1071, 2012
Analysis of nanobody paratopes reveals greater diversity than classical antibodies
LS Mitchell, LJ Colwell
Protein Engineering, Design and Selection 31 (7-8), 267-275, 2018
MGnify: the microbiome sequence data analysis resource in 2023
L Richardson, B Allen, G Baldi, M Beracochea, ML Bileschi, T Burdett, ...
Nucleic Acids Research 51 (D1), D753-D759, 2023
Charge as a selection criterion for translocation through the nuclear pore complex
LJ Colwell, MP Brenner, K Ribbeck
PLoS computational biology 6 (4), e1000747, 2010
Using attribution to decode binding mechanism in neural network models for chemistry
K McCloskey, A Taly, F Monti, MP Brenner, LJ Colwell
Proceedings of the National Academy of Sciences 116 (24), 11624-11629, 2019
The emergence of protein complexes: quaternary structure, dynamics and allostery
T Perica, JA Marsh, FL Sousa, E Natan, LJ Colwell, SE Ahnert, ...
Biochemical Society Transactions 40 (3), 475-491, 2012
Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase–tRNA pairs
D Cervettini, S Tang, SD Fried, JCW Willis, LFH Funke, LJ Colwell, ...
Nature Biotechnology 38 (8), 989-999, 2020
Masked language modeling for proteins via linearly scalable long-context transformers
K Choromanski, V Likhosherstov, D Dohan, X Song, A Gane, T Sarlos, ...
arXiv preprint arXiv:2006.03555, 2020
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