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Jan Byška
Jan Byška
Masaryk University, University of Bergen
Verified email at uib.no
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Year
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories
A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ...
Bioinformatics 34 (20), 3586-3588, 2018
2922018
MoleCollar and tunnel heat map visualizations for conveying spatio‐temporo‐chemical properties across and along protein voids
J Byška, A Jurčík, ME Gröller, I Viola, B Kozlikova
Computer Graphics Forum 34 (3), 1-10, 2015
35*2015
AnimoAminoMiner: Exploration of protein tunnels and their properties in molecular dynamics
J Byška, M Le Muzic, ME Gröller, I Viola, B Kozlikova
IEEE transactions on visualization and computer graphics 22 (1), 747-756, 2015
332015
VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality
V Brůža, J Byška, J Mičan, B Kozlíková
Computers & Graphics 98, 280-292, 2021
272021
Analysis of long molecular dynamics simulations using interactive focus+ context visualization
J Byška, T Trautner, SM Marques, J Damborský, B Kozlíková, M Waldner
Computer Graphics Forum 38 (3), 441-453, 2019
252019
Interactive exploration of ligand transportation through protein tunnels
K Furmanová, M Jarešová, J Byška, A Jurčík, J Parulek, H Hauser, ...
BMC bioinformatics 18, 1-16, 2017
242017
Comparative visualization of protein secondary structures
L Kocincová, M Jarešová, J Byška, J Parulek, H Hauser, B Kozlíková
BMC bioinformatics 18, 1-12, 2017
202017
State of the art of molecular visualization in immersive virtual environments
D Kuťák, P Vázquez, T Isenberg, M Krone, M Baaden, J Byška, ...
Computer Graphics Forum 42 (6), e14738, 2023
192023
COZOID: contact zone identifier for visual analysis of protein-protein interactions
K Furmanová, J Byška, EM Gröller, I Viola, JJ Paleček, B Kozlíková
BMC bioinformatics 19, 1-17, 2018
192018
Watergate: Visual Exploration of Water Trajectories in Protein Dynamics.
V Vad, J Byska, A Jurcík, I Viola, ME Gröller, H Hauser, SM Marques, ...
Vcbm, 33-42, 2017
182017
Vivern–a virtual environment for multiscale visualization and modeling of DNA nanostructures
D Kuťák, MN Selzer, J Byška, ML Ganuza, I Barišić, B Kozlíková, H Miao
IEEE Transactions on Visualization and Computer Graphics 28 (12), 4825-4838, 2021
162021
ChemVA: interactive visual analysis of chemical compound similarity in virtual screening
MV Sabando, P Ulbrich, M Selzer, J Byška, J Mičan, I Ponzoni, AJ Soto, ...
IEEE Transactions on Visualization and Computer Graphics 27 (2), 891-901, 2020
162020
LoopGrafter: a web tool for transplanting dynamical loops for protein engineering
J Planas-Iglesias, F Opaleny, P Ulbrich, J Stourac, Z Sanusi, GP Pinto, ...
Nucleic Acids Research 50 (W1), W465-W473, 2022
142022
Visibility-based approach to surface detection of tunnels in proteins
A Jurčík, J Byška, J Sochor, B Kozlíková
Proceedings of the 31st Spring Conference on Computer Graphics, 65-72, 2015
112015
Scale-space splatting: Reforming spacetime for cross-scale exploration of integral measures in molecular dynamics
J Pálenik, J Byška, S Bruckner, H Hauser
IEEE transactions on visualization and computer graphics 26 (1), 643-653, 2019
92019
Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases
A Abboud, P Bédoucha, J Byška, T Arnesen, N Reuter
Computational and Structural Biotechnology Journal 18, 532-547, 2020
82020
Visual analysis of ligand trajectories in molecular dynamics
A Jurčík, K Furmanová, J Byška, V Vonásek, O Vávra, P Ulbrich, H Hauser, ...
2019 IEEE Pacific Visualization Symposium (PacificVis), 212-221, 2019
82019
Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics.
I Kolesár, J Byska, J Parulek, H Hauser, B Kozlíková
VCBM/MedViz, 1-10, 2016
82016
sMolBoxes: Dataflow model for molecular dynamics exploration
P Ulbrich, M Waldner, K Furmanová, SM Marques, D Bednář, B Kozlíková, ...
IEEE Transactions on Visualization and Computer Graphics 29 (1), 581-590, 2022
72022
Visual analysis of protein–protein interaction docking models using COZOID tool
J Byska, A Jurcik, K Furmanova, B Kozlikova, JJ Palecek
Protein-Protein Interaction Networks: Methods and Protocols, 81-94, 2020
72020
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