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Nathalie Pochet
Nathalie Pochet
Assistant Professor, BWH/HMS/Broad
Verified email at broadinstitute.org
Title
Cited by
Cited by
Year
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
67362013
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
67362013
Type I interferons and microbial metabolites of tryptophan modulate astrocyte activity and central nervous system inflammation via the aryl hydrocarbon receptor
V Rothhammer, ID Mascanfroni, L Bunse, MC Takenaka, JE Kenison, ...
Nature medicine 22 (6), 586-597, 2016
9442016
FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast
S Smukalla, M Caldara, N Pochet, A Beauvais, S Guadagnini, C Yan, ...
Cell 135 (4), 726-737, 2008
4822008
Comparative analysis of RNA sequencing methods for degraded or low-input samples
X Adiconis, D Borges-Rivera, R Satija, DS DeLuca, MA Busby, AM Berlin, ...
Nature methods 10 (7), 623-629, 2013
4682013
Targeting mi R‐155 restores abnormal microglia and attenuates disease in SOD 1 mice
O Butovsky, MP Jedrychowski, R Cialic, S Krasemann, G Murugaiyan, ...
Annals of neurology 77 (1), 75-99, 2015
3222015
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
BJ Haas, A Dobin, B Li, N Stransky, N Pochet, A Regev
Genome biology 20 (1), 1-16, 2019
2952019
Mutations causing medullary cystic kidney disease type 1 lie in a large VNTR in MUC1 missed by massively parallel sequencing
A Kirby, A Gnirke, DB Jaffe, V Barešová, N Pochet, B Blumenstiel, C Ye, ...
Nature genetics 45 (3), 299-303, 2013
2692013
Distinct physiological states of Plasmodium falciparum in malaria-infected patients
JP Daily, D Scanfeld, N Pochet, K Le Roch, D Plouffe, M Kamal, O Sarr, ...
Nature 450 (7172), 1091-1095, 2007
2672007
Systematic benchmarking of microarray data classification: assessing the role of non-linearity and dimensionality reduction
N Pochet, F De Smet, JAK Suykens, BLR De Moor
Bioinformatics 20 (17), 3185-3195, 2004
2612004
Association of Brain DNA methylation in SORL1, ABCA7, HLA-DRB5, SLC24A4, and BIN1 with pathological diagnosis of Alzheimer disease
L Yu, LB Chibnik, GP Srivastava, N Pochet, J Yang, J Xu, J Kozubek, ...
JAMA neurology 72 (1), 15-24, 2015
2422015
Sequence-based estimation of minisatellite and microsatellite repeat variability
M Legendre, N Pochet, T Pak, KJ Verstrepen
Genome research 17 (12), 1787-1796, 2007
2402007
Non-invasive diagnosis of endometriosis based on a combined analysis of six plasma biomarkers
A Mihalyi, O Gevaert, CM Kyama, P Simsa, N Pochet, F De Smet, ...
Human reproduction 25 (3), 654-664, 2010
2102010
STAR-Fusion: fast and accurate fusion transcript detection from RNA-Seq
BJ Haas, A Dobin, N Stransky, B Li, X Yang, T Tickle, A Bankapur, ...
BioRxiv, 120295, 2017
1892017
Nanowire-mediated delivery enables functional interrogation of primary immune cells: application to the analysis of chronic lymphocytic leukemia
AK Shalek, JT Gaublomme, L Wang, N Yosef, N Chevrier, MS Andersen, ...
Nano letters 12 (12), 6498-6504, 2012
1812012
A targeted functional RNA interference screen uncovers glypican 5 as an entry factor for hepatitis B and D viruses
ER Verrier, CC Colpitts, C Bach, L Heydmann, A Weiss, M Renaud, ...
Hepatology 63 (1), 35-48, 2016
1662016
Does estrogen receptor negative/progesterone receptor positive breast carcinoma exist?
L De Maeyer, E Van Limbergen, K De Nys, P Moerman, N Pochet, ...
Journal of clinical oncology: official journal of the American Society of …, 2008
1202008
Axillary lymph node status of operable breast cancers by combined steroid receptor and HER-2 status: triple positive tumours are more likely lymph node positive
B Van Calster, I Vanden Bempt, M Drijkoningen, N Pochet, J Cheng, ...
Breast cancer research and treatment 113, 181-187, 2009
1182009
Axillary lymph node status of operable breast cancers by combined steroid receptor and HER-2 status: triple positive tumours are more likely lymph node positive
B Van Calster, I Vanden Bempt, M Drijkoningen, N Pochet, J Cheng, ...
Breast cancer research and treatment 113, 181-187, 2009
1182009
Kernel methods in bioengineering, signal and image processing
G Camps-Valls
Igi Global, 2006
1122006
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