Vedran Franke
Vedran Franke
Max Delbrueck Center
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A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
M Flemr, R Malik, V Franke, J Nejepinska, R Sedlacek, K Vlahovicek, ...
Cell 155 (4), 807-816, 2013
Genomation: a toolkit to summarize, annotate and visualize genomic intervals
A Akalin, V Franke, K Vlahoviček, CE Mason, D Schübeler
Bioinformatics 31 (7), 1127-1129, 2015
Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy
E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula, R Arsiè, F Klironomos, ...
IScience 24 (3), 102151, 2021
RNA localization is a key determinant of neurite-enriched proteome
A Zappulo, D Van Den Bruck, C Ciolli Mattioli, V Franke, K Imami, ...
Nature communications 8 (1), 583, 2017
A cohesin-independent role for NIPBL at promoters provides insights in CdLS
J Zuin, V Franke, WFJ van IJcken, A Van Der Sloot, ID Krantz, ...
PLoS genetics 10 (2), e1004153, 2014
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing
K Abe, R Yamamoto, V Franke, M Cao, Y Suzuki, MG Suzuki, ...
The EMBO journal 34 (11), 1523-1537, 2015
Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells
M Kim, V Franke, B Brandt, ED Lowenstein, V Schöwel, S Spuler, A Akalin, ...
Nature communications 11 (1), 6375, 2020
Sculpting the transcriptome during the oocyte-to-embryo transition in mouse
P Svoboda, V Franke, RM Schultz
Current topics in developmental biology 113, 305-349, 2015
Cell-type specialization is encoded by specific chromatin topologies
W Winick-Ng, A Kukalev, I Harabula, L Zea-Redondo, D Szabó, M Meijer, ...
Nature 599 (7886), 684-691, 2021
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
V Franke, S Ganesh, R Karlic, R Malik, J Pasulka, F Horvat, M Kuzman, ...
Genome research 27 (8), 1384-1394, 2017
Alternative 3′ UTRs direct localization of functionally diverse protein isoforms in neuronal compartments
C Ciolli Mattioli, A Rom, V Franke, K Imami, G Arrey, M Terne, A Woehler, ...
Nucleic acids research 47 (5), 2560-2573, 2019
Single-cell RNA-sequencing of herpes simplex virus 1-infected cells connects NRF2 activation to an antiviral program
E Wyler, V Franke, J Menegatti, C Kocks, A Boltengagen, S Praktiknjo, ...
Nature communications 10 (1), 4878, 2019
The male germ cell gene regulator CTCFL is functionally different from CTCF and binds CTCF-like consensus sites in a nucleosome composition-dependent manner
F Sleutels, W Soochit, M Bartkuhn, H Heath, S Dienstbach, P Bergmaier, ...
Epigenetics & chromatin 5, 1-21, 2012
PiGx: reproducible genomics analysis pipelines with GNU Guix
R Wurmus, B Uyar, B Osberg, V Franke, A Gosdschan, K Wreczycka, ...
Gigascience 7 (12), giy123, 2018
Long non-coding RNA exchange during the oocyte-to-embryo transition in mice
R Karlic, S Ganesh, V Franke, E Svobodova, J Urbanova, Y Suzuki, F Aoki, ...
Dna research 24 (2), 129-141, 2017
HOT or not: examining the basis of high-occupancy target regions
K Wreczycka, V Franke, B Uyar, R Wurmus, S Bulut, B Tursun, A Akalin
Nucleic acids research 47 (11), 5735-5745, 2019
Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection
E Wyler, J Menegatti, V Franke, C Kocks, A Boltengagen, T Hennig, ...
Genome biology 18, 1-19, 2017
A novel complex, RUNX1-MYEF2, represses hematopoietic genes in erythroid cells
B van Riel, T Pakozdi, R Brouwer, R Monteiro, K Tuladhar, V Franke, ...
Molecular and cellular biology 32 (19), 3814-3822, 2012
PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC
LM Appel, V Franke, M Bruno, I Grishkovskaya, A Kasiliauskaite, ...
Nature Communications 12 (1), 6078, 2021
Using cloud computing infrastructure with CloudBioLinux, CloudMan, and Galaxy
E Afgan, B Chapman, M Jadan, V Franke, J Taylor
Current protocols in bioinformatics 38 (1), 11.9. 1-11.9. 20, 2012
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Articles 1–20