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Bora Uyar
Bora Uyar
Max Delbrueck Center for Molecular Medicine - The Berlin Institute for Medical Systems Biology
Verified email at mdc-berlin.de
Title
Cited by
Cited by
Year
Attributes of short linear motifs
NE Davey, K Van Roey, RJ Weatheritt, G Toedt, B Uyar, B Altenberg, ...
Molecular BioSystems 8 (1), 268-281, 2012
6252012
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation
K Van Roey, B Uyar, RJ Weatheritt, H Dinkel, M Seiler, A Budd, TJ Gibson, ...
Chemical reviews 114 (13), 6733-6778, 2014
4542014
ELM—the database of eukaryotic linear motifs
H Dinkel, S Michael, RJ Weatheritt, NE Davey, K Van Roey, B Altenberg, ...
Nucleic acids research 40 (D1), D242-D251, 2012
3732012
The eukaryotic linear motif resource ELM: 10 years and counting
H Dinkel, K Van Roey, S Michael, NE Davey, RJ Weatheritt, D Born, ...
Nucleic acids research 42 (D1), D259-D266, 2014
3642014
ELM 2016—data update and new functionality of the eukaryotic linear motif resource
H Dinkel, K Van Roey, S Michael, M Kumar, B Uyar, B Altenberg, ...
Nucleic acids research 44 (D1), D294-D300, 2016
3362016
Degrons in cancer
B Mészáros, M Kumar, TJ Gibson, B Uyar, Z Dosztányi
Science signaling 10 (470), eaak9982, 2017
1302017
Mutations in disordered regions can cause disease by creating dileucine motifs
K Meyer, M Kirchner, B Uyar, JY Cheng, G Russo, ...
Cell 175 (1), 239-253. e17, 2018
1272018
Single-cell analyses of aging, inflammation and senescence
B Uyar, D Palmer, A Kowald, HM Escobar, I Barrantes, S Möller, A Akalin, ...
Ageing research reviews 64, 101156, 2020
1172020
genBlastG: using BLAST searches to build homologous gene models
R She, JSC Chu, B Uyar, J Wang, K Wang, N Chen
Bioinformatics 27 (15), 2141-2143, 2011
1122011
How pathogens use linear motifs to perturb host cell networks
A Via, B Uyar, C Brun, A Zanzoni
Trends in biochemical sciences 40 (1), 36-48, 2015
1082015
Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?
B Uyar, RJ Weatheritt, H Dinkel, NE Davey, TJ Gibson
Molecular BioSystems 10 (10), 2626-2642, 2014
1012014
FACT sets a barrier for cell fate reprogramming in Caenorhabditis elegans and human cells
E Kolundzic, A Ofenbauer, SI Bulut, B Uyar, G Baytek, A Sommermeier, ...
Developmental Cell 46 (5), 611-626. e12, 2018
852018
PiGx: reproducible genomics analysis pipelines with GNU Guix
R Wurmus, B Uyar, B Osberg, V Franke, A Gosdschan, K Wreczycka, ...
Gigascience 7 (12), giy123, 2018
682018
HOT or not: examining the basis of high-occupancy target regions
K Wreczycka, V Franke, B Uyar, R Wurmus, S Bulut, B Tursun, A Akalin
Nucleic acids research 47 (11), 5735-5745, 2019
582019
Transcriptional repression of NFKBIA triggers constitutive IKK‐ and proteasome‐independent p65/RelA activation in senescence
M Kolesnichenko, N Mikuda, UE Höpken, E Kärgel, B Uyar, AB Tufan, ...
The EMBO journal 40 (6), e104296, 2021
482021
Identifying tumor cells at the single-cell level using machine learning
J Dohmen, A Baranovskii, J Ronen, B Uyar, V Franke, A Akalin
Genome Biology 23 (1), 123, 2022
362022
RNA-seq analysis of the C. briggsae transcriptome
B Uyar, JSC Chu, IA Vergara, SY Chua, MR Jones, T Wong, DL Baillie, ...
Genome research 22 (8), 1567-1580, 2012
342012
Computational genomics with R
A Akalin
Chapman and Hall/CRC, 2020
322020
RCAS: an RNA centric annotation system for transcriptome-wide regions of interest
B Uyar, D Yusuf, R Wurmus, N Rajewsky, U Ohler, A Akalin
Nucleic acids research 45 (10), e91-e91, 2017
302017
The IκB kinase complex is a regulator of mRNA stability
N Mikuda, M Kolesnichenko, P Beaudette, O Popp, B Uyar, W Sun, ...
The EMBO journal 37 (24), e98658, 2018
282018
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